BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946686

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01230.1 | Symbols:  | Reticulon family protein | chr4:51626...   139    1e-32
  AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135...   119    1e-26


> AT4G01230.1 | Symbols:  | Reticulon family protein | chr4:516264-517408 
REVERSE LENGTH=729
Length=729

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 87/93 (94%), Gaps = 0/93 (0%)
 Strand=Plus/Plus

Query  24   ATGGAGGAGGAAAAGCTAGAAATCGTTGGACCGTTGGAGAAGCCGTTGATGGGAAACATC  83
            ||||||||||| |||||||||||||| || || |||||| ||||||||||||||||||||
Sbjct  1    ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC  60

Query  84   GTACCAGAGGAGATCAACGGCTTGGATTCGCTT  116
            ||||||||||||||||| |||||||||||||||
Sbjct  61   GTACCAGAGGAGATCAATGGCTTGGATTCGCTT  93


> AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135112-20136970 
FORWARD LENGTH=1596
Length=1596

 Score =  119 bits (64),  Expect = 1e-26
 Identities = 73/77 (95%), Gaps = 2/77 (3%)
 Strand=Plus/Plus

Query  158  GATTTCATTTCACCGCCGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATCTG  217
            ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  155  GATTTCATTCCACCGCCGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTG  214

Query  218  AAGAA-AACTTTGAAAG  233
            ||||| || ||||||||
Sbjct  215  AAGAAGAA-TTTGAAAG  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5