BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946686 Length=240 Score E Sequences producing significant alignments: (Bits) Value AT4G01230.1 | Symbols: | Reticulon family protein | chr4:51626... 139 1e-32 AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135... 119 1e-26 > AT4G01230.1 | Symbols: | Reticulon family protein | chr4:516264-517408 REVERSE LENGTH=729 Length=729 Score = 139 bits (75), Expect = 1e-32 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 24 ATGGAGGAGGAAAAGCTAGAAATCGTTGGACCGTTGGAGAAGCCGTTGATGGGAAACATC 83 ||||||||||| |||||||||||||| || || |||||| |||||||||||||||||||| Sbjct 1 ATGGAGGAGGAGAAGCTAGAAATCGTCGGGCCTTTGGAGGAGCCGTTGATGGGAAACATC 60 Query 84 GTACCAGAGGAGATCAACGGCTTGGATTCGCTT 116 ||||||||||||||||| ||||||||||||||| Sbjct 61 GTACCAGAGGAGATCAATGGCTTGGATTCGCTT 93 > AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135112-20136970 FORWARD LENGTH=1596 Length=1596 Score = 119 bits (64), Expect = 1e-26 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 158 GATTTCATTTCACCGCCGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATCTG 217 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 155 GATTTCATTCCACCGCCGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTG 214 Query 218 AAGAA-AACTTTGAAAG 233 ||||| || |||||||| Sbjct 215 AAGAAGAA-TTTGAAAG 230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10857833784 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5