BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946687

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydr...   377    4e-104
  AT1G35530.2 | Symbols:  | DEAD/DEAH box RNA helicase family pro...  71.3    8e-12 
  AT1G36020.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...  71.3    8e-12 


> AT5G43600.1 | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase 
| chr5:17512476-17515495 FORWARD LENGTH=1821
Length=1821

 Score =  377 bits (204),  Expect = 4e-104
 Identities = 232/246 (94%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  176  AAGGTTGGGGGTTAAACCGAAGAGATCTCTGGAGATAATCTTGTTTACATCTGAAGAACC  235
            ||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  670  AAGGTCGGGGTTTAAACCGAAGAGGTCTCTGGAGATAATCTTGTTCACATCTGAAGAACC  729

Query  236  AACCCGATTTGGGATCAGTTGTTTAGGAAGCTGCTTGCTTGCTGGAAGCAAAGAACTTAC  295
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  730  GACCCGATTTGGGATCAGTTGTTTAGGAAGCCGCTTGCTTGCTGGAAGCAAAGAACTTGC  789

Query  296  AGAAGTACTAAAGACTACAATTTTTGATGGCCAAAATGTGTCCTTTATAGAAGCAGCTAG  355
            ||||| ||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct  790  AGAAGCACTAAAGACTACAGTTGTTGATGGCCAAAATGTGTCTTTTATAGAAGCAGCTAG  849

Query  356  ATCAACTGGATACGCAGAAGATAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGG  415
            |||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  850  ATCAGCAGGATACGCAGAAGACAAAGATGACGACTTATCGAGTGTGTTCTTGAAGAAAGG  909

Query  416  AAGTTA  421
            ||||||
Sbjct  910  AAGTTA  915


> AT1G35530.2 | Symbols:  | DEAD/DEAH box RNA helicase family protein 
 | chr1:13089869-13097078 FORWARD LENGTH=4298
Length=4298

 Score = 71.3 bits (38),  Expect = 8e-12
 Identities = 42/44 (95%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  71   agagatggaATCTAGGGTTCCAATAGAAACCATCGAAGAAGACG  114
            ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct  122  AGAAATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACG  165


> AT1G36020.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: DEAD/DEAH box RNA helicase family protein  (TAIR:AT1G35530.1); 
Has 18 Blast hits to 18 proteins in 5 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr1:13433919-13434340 REVERSE LENGTH=351
Length=351

 Score = 71.3 bits (38),  Expect = 8e-12
 Identities = 40/41 (98%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  74   gatggaATCTAGGGTTCCAATAGAAACCATCGAAGAAGACG  114
            ||||| |||||||||||||||||||||||||||||||||||
Sbjct  30   GATGGGATCTAGGGTTCCAATAGAAACCATCGAAGAAGACG  70



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5