BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946695
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e... 111 1e-23
> AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination
effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795
Length=795
Score = 111 bits (60), Expect = 1e-23
Identities = 190/251 (76%), Gaps = 16/251 (6%)
Strand=Plus/Plus
Query 834 GAGATTTGGGTTACGGATAAGATTGATCCCAACGCAGTGTCGTGGAGCA-AGTTTTTGAT 892
||||||||| |||| || ||||||||||||| |||||||||||||||| | |||||||
Sbjct 472 GAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCATA-TTTTTGAA 530
Query 893 GGTGGAAATGAGACCACTCACTGGTTTT-CAGTTCA-ATCAAGAAGCTGTGAGCTTCGCC 950
||||| || | ||| || | ||||||| || | || || ||| ||||||| |
Sbjct 531 AGTGGATATCAAACCGCTTATTGGTTTTCCAAAAGACTTC--GATCCTGGGAGCTTCTTC 588
Query 951 ATTGATGAGGAGAAGAAAGTTGTTTTGGTTTTCGATCAAGA-AG-TATATA-ACCCG-AC 1006
||||| || ||||||||||| ||| |||||| |||| || | || || | | ||
Sbjct 589 ATTGACGAAGAGAAGAAAGTCGTTGTGGTTTACGATTTGGACGGACATTTATA-TAGTAC 647
Query 1007 CAAG-ACCATTCT-CAT-CCAAACAG-TTTACATCATTGGAGAAGATGGATACTTCAAAT 1062
|||| | | | | | | ||||| | |||||||||||||||||||||||||||||| ||
Sbjct 648 CAAGAAGAACTGTGCCTACCAAA-GGCTTTACATCATTGGAGAAGATGGATACTTCACAT 706
Query 1063 CTATGAAAATC 1073
|| | ||||||
Sbjct 707 CTGTAAAAATC 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5