BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946698

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15953.1 | Symbols:  | Maternally expressed gene (MEG) famil...  93.5    1e-18


> AT4G15953.1 | Symbols:  | Maternally expressed gene (MEG) family 
protein | chr4:9042897-9043337 FORWARD LENGTH=324
Length=324

 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 60/65 (92%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  27  ATGTCGCTAACACGCTTTGCTATACTTTGCATAATCTTCGTTTCCCTCTTTGGTGTGCAT  86
           ||||||||   ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1   ATGTCGCTGTTACGTTTTGCTATACTTTGCATAATTTTCGTTTCCCTCTTTGGTGTGCAT  60

Query  87  GAATG  91
           |||||
Sbjct  61  GAATG  65



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5