BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946699
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15950.1 | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, ... 985 0.0
> AT4G15950.1 | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II,
Rpb4, core protein | chr4:9040683-9042129 FORWARD LENGTH=813
Length=813
Score = 985 bits (533), Expect = 0.0
Identities = 688/759 (91%), Gaps = 26/759 (3%)
Strand=Plus/Plus
Query 1 TCGTTCTCTCGTAGCAGCAAAATGTCAGAGAAAGGAGGCAAAGGGCTCAAATCCTCTCTC 60
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 41 TCG-TCTCTCGTAGCAGAAAAATGTCAGAGAAAGGAGGCAAGGGGCTCAAATCCTCTCTC 99
Query 61 AAATCCAAAGATGGGTTTTTGGTTGCAGGAGGGAAGGATGGGAACTCAACAAAGCTCAAG 120
|| |||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 100 AAGTCCAAAGA------------T---GGAGGGAAGGATGGGAGCTCAACAAAGCTCAAG 144
Query 121 AAGGGTAGAAAAATCCACTTTGATCAAGGGACTCCACCACCTAATTACAAGATTCTCAAT 180
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 145 AAGGGTAGAAAAATCCACTTTGATCAACGGACTCCACCTGCTAATTACAAGATTCTCAAT 204
Query 181 GGTTCTTCTGATCCACTACCATTTCAGACTTCTGCTGCTAAAGT-TGGTAAAGGAGACAA 239
| ||||||||||| || ||||||||||| ||||||||||||| | ||| ||| | |||||
Sbjct 205 GTTTCTTCTGATCAACAACCATTTCAGAGTTCTGCTGCTAAA-TGTGGGAAAAGTGACAA 263
Query 240 ACCTACCAAGTCTAGCAAAAACTCTCTGCAGTCGTTTGAGCTCAAAGATCTTCCTGAGAA 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 264 ACCTACCAAGTCTAGCAAAAACTCTCTGCATTCGTTTGAGCTCAAAGATCTTCCTGAGAA 323
Query 300 TGCTGAATGCATGATGGATTGTGAAGCTTTTCAGATATTAGATGGAATTAAGGGACATTT 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 324 TGCTGAATGCATGATGGACTGTGAAGCTTTTCAGATATTAGATGGAATTAAGGGACAATT 383
Query 360 GGTTGGGTTGTCTGAAGATCCTTCCATCAAAATTCCTGTATCTTATGACAGAGCATTGGC 419
|||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 384 GGTTGGCTTGTCTGAAGATCCGTCAATTAAAATTCCTGTATCTTATGACAGAGCATTGGC 443
Query 420 TTATGTGGATAGTTGTGTTCATTACTCAAACCCTCAATCTGTCAGAAAAGTCCTTGAACC 479
|||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 444 TTATGTTGAGAGTTGTGTTCACTACACAAACCCTCAATCTGTCAGAAAAGTCCTTGAACC 503
Query 480 TCTGAAAACCCATGGTATCTCTGACGGCGAGATGTGTGTGATTGCGAATGCTTCCCCAGA 539
||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||
Sbjct 504 TCTGAAAACGTATGGTATCTCTGATGGCGAGATGTGTGTTATTGCAAATGCTTCTTCAGA 563
Query 540 TACCGTAGATGAAGTTCTTGCCTTTATTCCATCGCTGAAGGCTAAAAAAGAGGTGATCAA 599
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 564 GAGCGTAGATGAAGTTCTTGCCTTTATTCCATCGCTGAAGACTAAAAAAGAGGTGATCAA 623
Query 600 TCAACCCCTACAAGATGCATTGGTGGAGCTAGCCAAGCTGAAGAAATCGGGATGATGAGC 659
|||||| |||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 624 TCAACCTCTACAAGATGCATTGGAGGAGCTATCCAAGCTGAAGAAATCGGAATGATGAGC 683
Query 660 AG-A--CTGCTGCAGTCAATGGTTCAATGCTAGGATTAGTTTGCAGCTAAAC-T--TAAA 713
|| | |||||||||| |||||||||||||||||| |||||||||| || || | ||||
Sbjct 684 AGCAGACTGCTGCAGTGAATGGTTCAATGCTAGGAGTAGTTTGCAGGTAGACATCATAAA 743
Query 714 ATGTATTTGGCGTCTTTGCCTTCCTCAACATTAAC-AAC 751
||||| ||| |||||||||||| |||||||||||| |||
Sbjct 744 ATGTAATTG-CGTCTTTGCCTTTCTCAACATTAACCAAC 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5