BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946710

Length=859
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G20900.1 | Symbols: JAZ12, TIFY3B | jasmonate-zim-domain pro...   182    6e-45


> AT5G20900.1 | Symbols: JAZ12, TIFY3B | jasmonate-zim-domain protein 
12 | chr5:7090704-7092539 FORWARD LENGTH=1081
Length=1081

 Score =  182 bits (98),  Expect = 6e-45
 Identities = 122/134 (91%), Gaps = 0/134 (0%)
 Strand=Plus/Plus

Query  1    CAAGTTTTGAGAGACAAACCATGACTAAGGTTAAAGACGAGCCACGCGCTTCCGTAGAAG  60
            ||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct  160  CAAATTTTGAGAGACAAGCCATGACTAAGGTGAAAGATGAGCCACGCGCTTCCGTTGAAG  219

Query  61   ATGGATGTGGTGTTGCCGACGGTGACGGCGGCGCAGCTGAGATCGGCAGAACCGGATCTG  120
             ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct  220  GTGGATGTGGTGTTGCCGACGGTGACGGCGGCGCGGCTGAGATCGGCGGTACCGGATCTG  279

Query  121  CTGATAAATTGAtt  134
             ||| |||| ||||
Sbjct  280  TTGAGAAATCGATT  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41895278598


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5