BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946720
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15780.1 | Symbols: ATVAMP724, VAMP724 | vesicle-associated ... 1142 0.0
> AT4G15780.1 | Symbols: ATVAMP724, VAMP724 | vesicle-associated
membrane protein 724 | chr4:8979889-8981768 REVERSE LENGTH=932
Length=932
Score = 1142 bits (618), Expect = 0.0
Identities = 676/704 (96%), Gaps = 3/704 (0%)
Strand=Plus/Plus
Query 2 ATACTCGGTGGCGACTC-AAATGGGTCAAGAATCGTTTATCTACAGCTTCGTCGCCAGAG 60
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 52 ATACTCGGTGGCGACTCAAAATGGGTCAAGAATCGTTTATCTATAGCTTCGTCGCCAGAG 111
Query 61 GCACTATGATCCTCGCCGAGTATACCGAATTCACCGGCAATTTCCCGTCTATTGCTGCTC 120
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 112 GAACTATGATCCTCGCCGAGTATACCGAATTCACAGGCAATTTCCCGTCTATTGCTGCTC 171
Query 121 AGTGTCTCCAGAAGCTTCCTTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AGTGTCTCCAGAAGCTTCCGTCCTCCAGCAACAGCAAGTTCACTTACAACTGCGATCACC 231
Query 181 ATACCTTCAATTTCCTCGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATACCTTCAATTTCCTTGTCGAAGATGGCTACGCATATTGTGTTGTGGCGAAAGATTCTC 291
Query 241 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGT-AAGGGCTGATTTCAAGAAGAGA 299
||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 292 TTAGCAAGCAAATCTCGATCGCATTTCTGGAGCGTGTGAAAG-CTGATTTCAAGAAGAGA 350
Query 300 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTAAACAAGGAATTCGGGCCG 359
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 351 TATGGAGGTGGAAAAGCAAGTACAGCTATCGCCAAAAGTCTCAACAAGGAGTTCGGGCCG 410
Query 360 GTGATGAAGGAACACATGAATTATATTGTAGACCATGCAGAGGAAATTGAAAAACTAATA 419
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 411 GTGATGAAGGAACACATGAATTATATTGTTGACCATGCAGAGGAGATTGAAAAACTAATA 470
Query 420 AAAGTCAAGGCTCAAGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCG 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AAAGTCAAGGCTCAGGTTTCAGAAGTTAAAAGTATAATGTTGGAGAATATTGACAAGGCA 530
Query 480 ATCGACAGAGGGGAAAATCTAACGGTTCTTACTGACAAAACCGAGAATCTACGCTCTCAG 539
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 531 ATCGACAGAGGGGAAAATCTAACAGTTCTTACTGACAAGACCGAGAATCTACGCTCTCAG 590
Query 540 GCACAGGAGTACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 599
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GCGCGGGAATACAAGAAACAAGGGACACAGGTGAGGAGGAAATTGTGGTACCAGAACATG 650
Query 600 AAGATAAAACTTGTGGTTCTCGGGATCTTGCTACTATTTGTTCTCATAATCTGGATATCG 659
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 651 AAGATAAAACTGGTGGTTCTTGGGATCTTGCTACTACTTGTTCTCATAATCTGGATATCG 710
Query 660 GTTTGTCACGGGTTCAATTGCACGGATTGAAGATGCAACAAATT 703
|||||||| || || |||||||||||||||||| |||||||||
Sbjct 711 GTTTGTCATGGATTTAATTGCACGGATTGAAGACACAACAAATT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5