BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946724
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15760.1 | Symbols: MO1 | monooxygenase 1 | chr4:8972649-897... 1862 0.0
> AT4G15760.1 | Symbols: MO1 | monooxygenase 1 | chr4:8972649-8974651
REVERSE LENGTH=1508
Length=1508
Score = 1862 bits (1008), Expect = 0.0
Identities = 1167/1245 (94%), Gaps = 6/1245 (0%)
Strand=Plus/Plus
Query 1 CTTTAGATCTGAAAATATCAGCTATCAAATGGAAGAAATCGGCATAGTTATTGTCGGCGG 60
|||||||||||||||| |||||| | ||||||| |||||||| |||||||| ||||||||
Sbjct 151 CTTTAGATCTGAAAATCTCAGCTTTGAAATGGAGGAAATCGGAATAGTTATCGTCGGCGG 210
Query 61 CGGAATCGCTGGTCTCGCCACTTCCCTTGCTCTTCATAGGAAAGGGATAAAGAGTGTGGT 120
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 211 CGGAATCGCTGGTCTCGCCACTTCCATTGCTCTTCATAGGAAAGGAATAAAGAGTGTGGT 270
Query 121 CTTGGAGAGAGCAGAGAAAGTGAGATCGGAAGGAGCTGGAATCGGAACTCTCACTAATGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 271 GTTGGAGAGAGCAGAGAAAGTGAGATCGGAAGGAGCTGGAATCGGAACTCTCTCCAATGG 330
Query 181 TTGGAGGGCTCTTGATCAACTTGGTGTCGGTGATCGTCTTCGTCT-AACTTC-TCGTCTT 238
|||||| || |||||||| ||||| || |||||||| |||||||| || ||| || ||||
Sbjct 331 TTGGAGAGCCCTTGATCAGCTTGGCGTTGGTGATCGCCTTCGTCTCAA-TTCTTC-TCTT 388
Query 239 ATTCACAAGGCACGGACCATGTTGATTGAAAATGGGAAAAAACAAGAATTTGTGTCAACC 298
||||||||||||||||||||||||||||| ||||| ||||||| |||||| || ||||
Sbjct 389 ATTCACAAGGCACGGACCATGTTGATTGAGAATGGAAAAAAACGAGAATTCGTTTCAAAT 448
Query 299 CTCGTAGACGAAGCTCGTTGTATTAAAAGGAACGATCTTGTTGAGGCCTTAGCCGATGCT 358
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 449 ATAGTAGACGAAGCTCGTTGTATTAAAAGGAACGATCTTGTTGAGGCCTTATCCGATGCC 508
Query 359 CTTCCGGAAGAAACCATCCGGTTCGGTTCTCAAATTGTTTCTATTGAGGAAGACAAAAGT 418
|||||| ||| ||||||||||||||||||||| ||||||||||||||| | ||||||| |
Sbjct 509 CTTCCGAAAGGAACCATCCGGTTCGGTTCTCATATTGTTTCTATTGAGCAGGACAAAACT 568
Query 419 ACGTCGTTTCCGGTTGTTCACTTAACCAATGGAAATACCATCAAAGCCAAGGTCTTGATT 478
|||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 569 ACGTTGTTTCCGGTTGTTCACTTAGCCAATGGAAATAGCATCAAAGCCAAGGTCCTGATT 628
Query 479 GGATGTGATGGTGCCAATTCTATCGTCAGTGATTATTTGCAGTTAAATCCGAAAAAGGCG 538
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 629 GGATGCGATGGTGCCAATTCTATCGTCAGTGATTATTTGCAGTTAAACCCGAAAAAGGCG 688
Query 539 TTTGCTTGTCGGGCGGTGAGAGGGTTTACTAATTACCCAAATGGCCATGGATTTCCACAA 598
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 689 TTTGCTTGTCGTGCGGTGAGAGGGTTTACTAAGTACCCAAACGGCCATGGATTTCCACAA 748
Query 599 GAGGTTCTAAGAATAAAGCAAGGAAATATCTTAATCGGAAGGTTTCCTTTGAAC-GATAA 657
||||||||||| ||||||||||||||| ||||||| |||||| |||||||| || |||||
Sbjct 749 GAGGTTCTAAGGATAAAGCAAGGAAATGTCTTAATAGGAAGGCTTCCTTTG-ACGGATAA 807
Query 658 TCTAGTCTTTTGGTTTCTAGTACATATGCAAGACAATAATCACAATGGTAAAGATCAAGA 717
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TCAAGTCTTTTGGTTTCTAGTACATATGCAAGACAATAATCACAATGGTAAAGATCAAGA 867
Query 718 ATCGATTGCGAATCTGTGTCTAAAATGGGCCGAGGACTTGTCTGAAGACTGGAAAGAAAT 777
|||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||
Sbjct 868 ATCGATTGCGAATCTGTGTCGAAAATGGGCCGATGACTTGTCTGAAGATTGGAAAGAAAT 927
Query 778 GGTAAAAATATGCGATGTGGAGTCATTAACACTCACACACTTAAGGTACCGTGCGCCGTC 837
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 928 GGTAAAAATATGCAATGTGGAGTCATTAACACTCACACACTTAAGGTACCGAGCGCCATC 987
Query 838 GGAAATCATGTTTGGGAAATTTCGCCGTGGGACCGTCACTGTAGCCGGCGATGCAATGCA 897
|||||||||||| ||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 988 GGAAATCATGTTAGGGAAATTTCGTCGTGGGACAGTGACTGTAGCCGGCGATGCGATGCA 1047
Query 898 TGTGATGGGTCCGTTCTTGGCACAAGGCGGCTCAGCGGCGCTAGAGGATGCGGTTGTTTT 957
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1048 CGTGATGGGTCCGTTCTTGGCACAGGGCGGCTCAGCGGCGCTAGAGGATGCGGTTGTTTT 1107
Query 958 AGCTAGATGTCTAGCTAGGAAAGTGGGTCCGGGCCACGGAGACTTGTTAAAGGATTGTTC 1017
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1108 AGCTAGGTGTCTAGCTAGGAAAGTTGGTCCGGACCACGGAGACTTGTTAAAGGATTGTTC 1167
Query 1018 GATGAAAAACATTGAAGAAGCTATTGATGAGTATGTGGAGGAACGTAGGATGAGATTACT 1077
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1168 GATGAAAAACATTGAAGAAGCTATTGATGAGTATGTGGATGAACGTAGGATGAGATTACT 1227
Query 1078 CGGGCTTTCGGTGCAGACTTATTTGACCGGACGTTCGCTACAAACGTCATCAAAGGTTGT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1228 CGGGCTTTCGGTGCAGACTTATTTGACCGGACGTTCGCTACAAACGTCATCAAAGGTTCT 1287
Query 1138 GAGGCTAATGTTTATAGCTTTGTTGTTACTTTTGTTTGGCCGTGATCAGATTCGTCATAC 1197
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1288 GAGGCTAATGTTTATAGCTTTGTTGTTACTTTTGTTTGGTCGTGATCAAATTCGTCATAC 1347
Query 1198 TAGATACGATTGTGGCCGTCTCTAGAGATTTGATGGGCACTTTGT 1242
||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 1348 TAGGTACGACTGTGGCCGTCTCTAGAGATTTGATGGACATTTTGT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5