BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946734
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2719 0.0
> AT4G15720.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:8949460-8951540 FORWARD LENGTH=2081
Length=2081
Score = 2719 bits (1472), Expect = 0.0
Identities = 1709/1824 (94%), Gaps = 13/1824 (1%)
Strand=Plus/Plus
Query 54 GTCCCTCACAACCAAAACGAGTTCTTTTATCTCAAAACCAAAGCTTTCTTGGTCCACAAG 113
|||||||| || ||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 164 GTCCCTCAGTACAAAAACGACTTCTTTCATCTCAAAACCAAAGCTTTCTTGGTTCACAAG 223
Query 114 CTTTCAGAACCTA-CAGAC-CTATTTCTCACGAATTTACTACATGCTCTGACTCTGAAAC 171
||||||||| ||| || || || || ||||||||||||||||| |||||||||||||||
Sbjct 224 CTTTCAGAATCTACCA-ACGCTGCTT-TCACGAATTTACTACATACTCTGACTCTGAAAC 281
Query 172 TTGGGTTCGCGAGTAACACTTTCACTGTGAATCACCTCGTTAATAGTTATGTCAAGCTCA 231
||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 282 TTGGGTTCGCGAGCGACACTTTCACTGTGAATCACCTAGTTATTAGTTATGTCAAGCTCA 341
Query 232 AAGAAATCAACACTGCACGCAAGGTGTTTGATGAAATGTCTGAACCAAATGTGGTTTCAT 291
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 342 AAGAAATCAACACTGCACGCAAACTGTTTGATGAAATGTGTGAACCAAATGTGGTTTCAT 401
Query 292 GGACTTCGGTTATTTCTGGGTATAACGACATGGGTCAACCTCAAACTGCTCTTTCTATGT 351
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 402 GGACTTCGGTTATTTCTGGGTATAACGACATGGGTAAACCTCAAAATGCTCTTTCTATGT 461
Query 352 TTCAGGAGATGCATGAAGATAGATCTGTGCCTCCCAATGAGTACACGTTTGCTAGTGTCT 411
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 462 TTCAGAAGATGCATGAAGATAGACCTGTGCCTCCCAATGAGTACACGTTTGCTAGTGTCT 521
Query 412 TTAAAGCTTGTTCTGCTTTGGCTGAATCAAGAATCGGGAAAAACATCCATGCCCGTCTTG 471
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 522 TTAAAGCATGTTCTGCTTTGGCTGAATCAAGAATCGGTAAAAACATCCATGCCCGTCTGG 581
Query 472 AGGTATCCGGGCTCAGAAGGAATATTGTGGTGAGTTCCTCTCTTGTTGACATGTATGGGA 531
|| | || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 582 AGATTTCAGGGCTCAGAAGGAATATTGTAGTGAGTTCCTCTCTTGTTGACATGTATGGGA 641
Query 532 AATGCAACGATGTGGAAATGGCTAGACGGGTTTTTGACTCGATGATTGGTTATGGCAGAA 591
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 642 AATGCAACGATGTGGAAACCGCTAGACGGGTTTTCGACTCGATGATTGGTTATGGAAGAA 701
Query 592 ATGTTGTTTCTTGGACCTCGATGATCACTGCTTATGCGCAGAACGCTCGTGGCCATGAAG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ATGTTGTTTCTTGGACCTCGATGATCACTGCTTATGCGCAGAACGCTCGTGGCCATGAAG 761
Query 652 CTATTGAGTTGTTTAGATCATTCAATGCTGATTCGACGTCGGATAGGCCGAATCAGTTTA 711
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 762 CTATTGAGTTGTTTAGATCATTCAATGCTGCTTTGACGTCGGATAGGGCGAATCAGTTTA 821
Query 712 TGCTGGCTAGTGTAATTAATGCCTCCTCTAGTTTAGGTAGGCTACAATGGGGGCAAATTT 771
|||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| ||
Sbjct 822 TGCTGGCTAGTGTAATTAGCGCATGCTCTAGTTTAGGTAGGCTGCAATGGGGG-AAAGTT 880
Query 772 -CTCACGGGTTAGTTACTCGAGGTGGTTATGAATCGAACAATGTGGTTGCAACCTCGCTT 830
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 881 GCTCACGGGTTAGTTACTCGAGGTGGTTATGAATCGAACACTGTGGTTGCTACCTCTCTT 940
Query 831 CTAGATATGTACGCGAAATGCGGGTCTCTAACCTGTGCAGAGAAAATCTTCTTCAGAATT 890
||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||
Sbjct 941 CTAGATATGTACGCGAAATGCGGATCTCTAAGCTGTGCGGAGAAAATCTTCTTGAGAATT 1000
Query 891 CGCTGTCATTCTGTAATATCTTACACATCTATGATCATGGCAAAGGCAAAGCATGGACTT 950
|| ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||
Sbjct 1001 CGTTGTCATTCTGTTATTTCGTACACATCTATGATCATGGCGAAGGCAAAGCATGGACTT 1060
Query 951 GGAGAAGCAGCGCTTCAACTATTCGATGAAATGGTTGCAGGGAGAATAAAGCCTAACTAT 1010
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1061 GGAGAAGCAGCGGTTAAACTATTCGATGAAATGGTTGCAGGGAGAATAAATCCTAACTAT 1120
Query 1011 ATAACGTTACTTGGCGTGTTACACGCTTGTAGCCATTCGGGTCTGGTTAACGAAGGCTTA 1070
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1121 GTAACATTACTTGGCGTGTTACACGCTTGTAGCCATTCGGGTCTGGTTAACGAAGGCCTA 1180
Query 1071 GAATTCTTGAATTCAATGGCTGAGAAGTATGGTGTGATTCCTGACTCGAGGCATTATACA 1130
|||| ||||| || |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1181 GAATACTTGAGTTTAATGGCTGAGAAGTATGGTGTGGTTCCTGACTCGAGGCATTACACT 1240
Query 1131 TGTGTTGTTGATATGCTTGGAAGATTTGGTCGTGTTGATGAAGCTTATGATTTGGCAAAA 1190
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1241 TGTGTTGTTGATATGCTTGGAAGATTTGGTCGTGTTGATGAAGCTTATGAATTGGCGAAA 1300
Query 1191 ACAATAGACGTTGGAGCAGAGCAAGGTGCGCTATTGTGGGGAGCTCTTCTTTCAGCTGGT 1250
|| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1301 ACTATAGAAGTTGGAGCAGAGCAAGGTGCGCTCTTGTGGGGAGCTCTTCTCTCAGCTGGT 1360
Query 1251 AGGTTACATGGAAGAGTTGAGATTGTTAGTGAAGCGAGCAAGCGATTAATACAATCGAAT 1310
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1361 AGGTTACATGGAAGAGTTGAGATTGTAAGTGAAGCGAGCAAGCGATTAATACAATCTAAT 1420
Query 1311 CAGCAAGTAACAAGTGCGTACATCGCATTATCCAATGCTTATGCTGTGGCTGGAGGATGG 1370
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1421 CAGCAAGTGACAAGTGCGTACATCGCATTATCCAATGCTTATGCTGTGTCTGGAGGATGG 1480
Query 1371 GAAGATTCAGAATCTCTTCGATTAGAGATGAAACGTAGTGGAAATGTGAAAGAACGAGCT 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GAAGATTCAGAATCTCTTCGATTAGAGATGAAACGTAGTGGAAATGTGAAAGAACGAGCT 1540
Query 1431 TGTAGCTGGATTGAGAATAAGGATTCAGTTTATGTTTTTCATGCCGGGGATTTGTCATGT 1490
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1541 TGTAGCTGGATTGAAAATAAAGATTCAGTTTATGTTTTTCATGCTGGGGATTTGTCATGT 1600
Query 1491 GATGAGAGCGGTAAGATT-AAGAGGTTCCTGAAAAATCTGGAAAAGAGAATGAAGGAAAG 1549
|||||||||||| ||||| || |||||||||||| |||| || ||||||||||| |||||
Sbjct 1601 GATGAGAGCGGTGAGATTGAA-AGGTTCCTGAAAGATCTAGAGAAGAGAATGAAAGAAAG 1659
Query 1550 AGGACACAGAGGAAGTAGTAGTATGATCACAA---GTTCGTCGGTTTTCGTAGATGTTGA 1606
|||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||
Sbjct 1660 AGGACACAGAGGAAGTAGTAGTATGATCACAACAAGTTCATCGGTTTTTGTCGATGTTGA 1719
Query 1607 TGAGGAAGCTAAAGAGGAAATGGTGAGTTTGCATTGTGAGAGATTGGCTTTAGCATATGG 1666
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1720 TGAGGAAGCTAAAGATGAAATGGTGAGTTTGCATTGTGAAAGATTGGCTTTAGCATATGG 1779
Query 1667 ATTGCTTCATCTGCCTGCGGGATCAACAATTAGGATAATGAACAATTTGAGGATGTGTAG 1726
|||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1780 ATTGCTTCATTTGCCTGCAGGATCAACAATTAGGATTATGAACAATTTGAGGATGTGTAG 1839
Query 1727 AGATTGTCATGAGGCTTTCAAGCTGATCAGTGAGATTGTCGAGAGAGAAATTGTTGTTAG 1786
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1840 AGATTGCCATGAGGCTTTCAAGCTGATCAGTGAGATTGTGGAGAGGGAAATTGTTGTCAG 1899
Query 1787 GGATGTGAATAGGTTTCATTGTTTTAAGAATGGATCTTGCACTTGTCGTGATTTTTGGTG 1846
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1900 GGATGTGAATAGGTTTCATTGCTTTAAGAATGGCTCTTGCACTTGTCGTGATTATTGGTG 1959
Query 1847 AATTTGTTTAACTAGTTTAGATTG 1870
|| || |||| ||| ||| ||||
Sbjct 1960 AACTT-TTTA-CTAAATTATATTG 1981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92569804980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5