BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946737

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15715.1 | Symbols:  | Proteinase inhibitor I25, cystatin, c...   372    2e-102


> AT4G15715.1 | Symbols:  | Proteinase inhibitor I25, cystatin, 
conserved region | chr4:8945317-8945934 FORWARD LENGTH=533
Length=533

 Score =  372 bits (201),  Expect = 2e-102
 Identities = 312/364 (86%), Gaps = 13/364 (4%)
 Strand=Plus/Plus

Query  236  AGGGTTACGACGTTGATTGGGA-TAAAT-TGGACTTCAACTTCCCTGCCGTCAGA-TTCG  292
            |||||||||| ||||||| ||| ||||| | |||| ||||||||||||||| | | ||||
Sbjct  13   AGGGTTACGATGTTGATT-GGAGTAAATGTTGACTACAACTTCCCTGCCGTGA-ATTTCG  70

Query  293  AATGGGCATCA-GGTCTATCA-GCTCGACAT-ACCAATCTTGAGTTACTCAATCTGCTCC  349
            | |||| |  | | | | | | | || | || | ||||  ||||||| | || |||||| 
Sbjct  71   ATTGGGGA-AATGAT-TTTGATGATC-AAATGAACAATAATGAGTTAATGAAACTGCTCA  127

Query  350  TAGAGACAGCCATTGAAGAAGAAAACGAAGAAAATGGAACAAAACTTGAGTTTGTCAAGT  409
            ||||||| |||||||| ||||||||||||||||  ||||||| |||||||||||||||||
Sbjct  128  TAGAGACTGCCATTGACGAAGAAAACGAAGAAACCGGAACAAGACTTGAGTTTGTCAAGT  187

Query  410  ATGTGAGTGCAAATGTACTTGGCGTCCAAGGTTTTCTGTTTTACATAACATTTTGGGCAA  469
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  188  ATGTGAGTGCAAATGTACTTGGCGTCCAAGGTTTTTTGTTTTACATAACATTCTGGGCAA  247

Query  470  AGGATCTTTCCTCACCAGATCCAGAGCCAAAATTGT-ACCAAGCAAAGGTGCGGAAGTTT  528
            | ||||||||||||||| ||||| ||||| | |||| |||||||||| ||| ||||||||
Sbjct  248  AAGATCTTTCCTCACCAAATCCACAGCCACA-TTGTTACCAAGCAAAAGTGAGGAAGTTT  306

Query  529  GCGGATGAGATCGATGTTAGTGAATTCAGGTTAAGGCCAACACAAGAATGATCAATGGTG  588
            |||| ||||||||| |||||||| || ||| ||||||||||| ||||||||||||| |||
Sbjct  307  GCGGCTGAGATCGACGTTAGTGAGTTTAGGCTAAGGCCAACAAAAGAATGATCAATTGTG  366

Query  589  AGGT  592
            ||||
Sbjct  367  AGGT  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28834400378


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5