BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946739
Length=350
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr... 363 8e-100
AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr... 344 3e-94
> AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr4:8937393-8937892
FORWARD LENGTH=500
Length=500
Score = 363 bits (196), Expect = 8e-100
Identities = 274/312 (88%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 21 AATGGAGAAGCTACAAACGATGGTCTACGAGAAGCCTGTGGTGAT-TTTCAGTAAGAATT 79
||||||||| ||||||| |||| ||| ||||||| | || ||||| ||| || ||||| |
Sbjct 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTT-AGCAAGAACT 210
Query 80 CGTGCTGCATGTCTCACACAATCAAGACTCTCTTCCTT-GACTTTGGTGTGAACCCAACG 138
| ||||||||||||||||||||||||||||||||| || ||| |||| |||||||| |||
Sbjct 211 CTTGCTGCATGTCTCACACAATCAAGACTCTCTTC-TTAGACCTTGGCGTGAACCCGACG 269
Query 139 ATTTATGAGCTCGACGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAACTC 198
|| ||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||| |||
Sbjct 270 ATCTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTC 329
Query 199 GGCTGCAGCCCGACCGTACCAGTGGTGTTCATAGGAGGGCAGCTCGTAGGTGGAGCCAAT 258
|| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 330 GGGTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAAT 389
Query 259 CAAGTCATGAGCCTCCATCTCAATCGTTCTCTCGTCCCAATGCTTAAGCGCGTTGGAGCG 318
||||||||||| ||||||||||| || || || || |||||||||||||||| ||||||
Sbjct 390 CAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCT 449
Query 319 TTATGGGTTTGA 330
|||||| |||||
Sbjct 450 TTATGGCTTTGA 461
> AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr4:8931652-8932295
FORWARD LENGTH=644
Length=644
Score = 344 bits (186), Expect = 3e-94
Identities = 274/317 (86%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 18 ACCAATGGAGAAGCTACA-AACGATGGTCTACGAGAAGCCTGTGGTGAT-TTTCAGTAAG 75
||||||||| |||||||| || |||| ||| ||||||| | || ||||| ||| || ||
Sbjct 158 ACCAATGGATAAGCTACAGAA-GATGATCTCCGAGAAGTCGGTAGTGATCTTT-AGCAAA 215
Query 76 AATTCGTGCTGCATGTCTCACACAATCAAGACTCTCTTCCTTGACTTTGGTGTGAACCCA 135
|| || || |||||||||||||| ||||||||||||||| | |||||||| ||||| |||
Sbjct 216 AACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGGCGTGAATCCA 275
Query 136 ACGATTTATGAGCTCGACGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAA 195
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTGGCTCAG 335
Query 196 CTCGGCTGCAGCCCGACCGTACCAGTGGTGTTCATAGGAGGGCAGCTCGTAGGTGGAGCC 255
|| ||||||||||| ||||| || |||||||| || ||||||||||| || |||||||||
Sbjct 336 CTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGTTGGTGGAGCC 395
Query 256 AATCAAGTCATGAGCCTCCATCTCAATCGTTCTCTCGTCCCAATGCTTAAGCGCGTTGGA 315
|||||||||||||| |||||||||||||| ||||| || || ||||| ||| | ||||||
Sbjct 396 AATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAAGAGGGTTGGA 455
Query 316 GCGTTATGGGTTTGATT 332
|| ||||| |||||||
Sbjct 456 GCACTATGGCTTTGATT 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16387286174
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5