BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946741
Length=353
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr... 520 5e-147
AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr... 448 2e-125
AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr... 392 1e-108
AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr... 390 4e-108
AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr... 375 1e-103
> AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr4:8934324-8934921
FORWARD LENGTH=598
Length=598
Score = 520 bits (281), Expect = 5e-147
Identities = 320/339 (94%), Gaps = 1/339 (0%)
Strand=Plus/Plus
Query 9 AAAA-TTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAAT 67
|||| |||||| |||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 105 AAAATTTACAAAAACAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAAT 164
Query 68 TTTTAGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGG 127
||||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 165 TTTTAGCAAGAACTCATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGG 224
Query 128 CGTGAACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGC 187
||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 225 CGTGAACCCGACTATCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGC 284
Query 188 ATTGGCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGT 247
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 285 ATTGGCTCAGCTCGGATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGT 344
Query 248 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA 307
|||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 345 TGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAA 404
Query 308 ACGTGCTGGAGCATTATGGCTTTAACTTCAAAATAAATG 346
|||||||||||||||||||||||||||||||||||||||
Sbjct 405 ACGTGCTGGAGCATTATGGCTTTAACTTCAAAATAAATG 443
> AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr4:8937393-8937892
FORWARD LENGTH=500
Length=500
Score = 448 bits (242), Expect = 2e-125
Identities = 298/326 (91%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 23 AATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTTAGCAAGAACTC 82
||||||||| ||||||||||||||| | |||||||| ||||| || ||||||||||||||
Sbjct 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211
Query 83 GTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTGAACCCTACGAT 142
||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271
Query 143 CTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCGG 202
|||||| ||||| ||||| | |||||||| |||||||||||| |||||||||||||||||
Sbjct 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331
Query 203 GTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATCA 262
|||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391
Query 263 AGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAACGTGCTGGAGCATT 322
||||||||||||||||||||| ||||| || |||||||||||||| || |||||||| ||
Sbjct 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451
Query 323 ATGGCTTTAACTTCAAAATAAATGGA 348
|||||||| |||||||||||||||||
Sbjct 452 ATGGCTTTGACTTCAAAATAAATGGA 477
> AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr4:8931652-8932295
FORWARD LENGTH=644
Length=644
Score = 392 bits (212), Expect = 1e-108
Identities = 293/333 (88%), Gaps = 2/333 (1%)
Strand=Plus/Plus
Query 12 ATTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTT 71
|||| || | ||||||| || ||||| ||||||||| | |||||||| ||||| || |||
Sbjct 150 ATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTGATCTTT 209
Query 72 AGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTG 131
||||| ||||| || || ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 210 AGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTTGGCGTG 269
Query 132 AACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTG 191
|| || |||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 270 AATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAAGCATTG 329
Query 192 GCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGT 251
|||||||| || |||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct 330 GCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTTGTTGGT 389
Query 252 GGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAA-ACG 310
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |
Sbjct 390 GGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTAAAGAGG 449
Query 311 TGCTGGAGCATTATGGCTTTAACTTCAAAATAA 343
| ||||||| ||||||||| | ||||| ||||
Sbjct 450 -GTTGGAGCACTATGGCTTTGATTTCAAGATAA 481
> AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr4:8925806-8926310
FORWARD LENGTH=505
Length=505
Score = 390 bits (211), Expect = 4e-108
Identities = 284/320 (89%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 12 ATTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAGTAGTAATTTTT 71
|||| |||| |||||||||| |||||||||||||| | |||||||| |||||||| |||
Sbjct 111 ATTATAACACCAATGGAGAAGATACAAAAGATGATCTCCGAGAAGTCGGTAGTAATATTT 170
Query 72 AGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTTTGGCGTG 131
||||| ||||| || || ||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 171 AGCAATAACTCTTGTTGCATGTCACACACAATCAAGACTCTCTTCTTAGACCTTGGCGTG 230
Query 132 AACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCAAGCATTG 191
||||| || ||||||||||| ||||||||||||||||||| ||||||||| | ||||||
Sbjct 231 AACCCGACAATCTATGAGCTAGACGAGATCAACAGAGGAAAAGAGATAGAGTATGCATTG 290
Query 192 GCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGT 251
|||||||| || ||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 291 GCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGT 350
Query 252 GGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCTTAAACG- 310
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 351 GGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGC 410
Query 311 TGCTGGAGCATTATGGCTTT 330
| ||| || ||||||||||
Sbjct 411 TT-TGGGGCTTTATGGCTTT 429
> AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr4:8929179-8929765
FORWARD LENGTH=587
Length=587
Score = 375 bits (203), Expect = 1e-103
Identities = 286/326 (88%), Gaps = 5/326 (2%)
Strand=Plus/Plus
Query 6 TTCAAAATTACAACAACAATGGAGAACCTACAAAAGATGATCACTGAGAAGTCAG-TAGT 64
||| ||||| ||||| ||||||||| ||||| ||||||| | | |||||||| | ||||
Sbjct 44 TTC-AAATT--AACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTC-GTTAGT 99
Query 65 AATTTTTAGCAAGAACTCGTGCTGTATGTCTCACACAATCAAGACTCTCTTTTTAGACTT 124
|| |||||||| ||||| ||||| ||||| |||||||||||||||||||| |||||| |
Sbjct 100 GATATTTAGCAAAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCT 159
Query 125 TGGCGTGAACCCTACGATCTATGAGCTCGACGAGATCAACAGAGGAAGGGAGATAGAGCA 184
|||||| || || ||||| |||||||| || |||||||||||||||| |||||||||||
Sbjct 160 TGGCGTAAATCCGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCA 219
Query 185 AGCATTGGCTCAGCTCGGGTGCAGCCCGACCGTACCGGTGGTGTTCATTGGAGGGCAGCT 244
||||||||||||||| || |||||||||||||| || ||||||||||| |||||||||||
Sbjct 220 AGCATTGGCTCAGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCT 279
Query 245 TGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTCGTTCCAATGCT 304
||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 280 TGTCGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCT 339
Query 305 TAAACGTGCTGGAGCATTATGGCTTT 330
|||||| | ||| || ||||||||||
Sbjct 340 TAAACGCGTTGGGGCGTTATGGCTTT 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16538089421
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5