BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946744
Length=350
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr... 518 2e-146
AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr... 468 2e-131
AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr... 440 4e-123
AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr... 403 5e-112
AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr... 372 1e-102
> AT4G15660.1 | Symbols: | Thioredoxin superfamily protein | chr4:8925806-8926310
FORWARD LENGTH=505
Length=505
Score = 518 bits (280), Expect = 2e-146
Identities = 326/348 (94%), Gaps = 3/348 (1%)
Strand=Plus/Plus
Query 2 CCTTTTACATTATAACATCAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAG 61
||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 103 CCTATTACATTATAACACCAATGGAGAAGATACAAAAGATGATCTCCGAGAAGTCGGTAG 162
Query 62 TGATCTTTAGCAAGAATTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACC 121
| || |||||||| || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 163 TAATATTTAGCAATAACTCTTGTTGCATGTCACACACAATCAAGACTCTCTTCTTAGACC 222
Query 122 TTGGCGTGAACCCGACGATCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGC 181
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 223 TTGGCGTGAACCCGACAATCTATGAGCTAGACGAGATCAACAGAGGAAAAGAGATAGAGT 282
Query 182 ATGCATTAGCTCAGCTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGC 241
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 283 ATGCATTGGCTCAGCTTGGCTGCAGCCCGACTGTGCCAGTGGTGTTCATAGGAGGGCAGC 342
Query 242 TTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGC 301
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 343 TTGTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGC 402
Query 302 TTAAACGCGTTGGGGCTTTATGGCTTTGATTAAATATTATAAAGGAAT 349
|||||||| ||||||||||||||||||||| |||||| | |||| |||
Sbjct 403 TTAAACGCTTTGGGGCTTTATGGCTTTGATAAAATAT-A-AAAG-AAT 447
> AT4G15670.1 | Symbols: | Thioredoxin superfamily protein | chr4:8929179-8929765
FORWARD LENGTH=587
Length=587
Score = 468 bits (253), Expect = 2e-131
Identities = 309/336 (92%), Gaps = 3/336 (1%)
Strand=Plus/Plus
Query 14 TAACATCAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCA 73
||||| ||||||||||||||| ||||||| ||| ||||||||| ||||||| |||||||
Sbjct 51 TAACAAAAATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCA 110
Query 74 AGAATTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACC 133
| || || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 111 AAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATC 170
Query 134 CGACGATCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTC 193
||||||| |||||| |||| ||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 171 CGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTC 230
Query 194 AGCTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAG 253
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 231 AGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAG 290
Query 254 CCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTG 313
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 291 CCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTG 350
Query 314 GGGCTTTATGGCTTTGATTAAATATTATAAAGGAAT 349
|||| |||||||||||| ||| || |||||| |||
Sbjct 351 GGGCGTTATGGCTTTGAC-AAA-AT-ATAAAGAAAT 383
> AT4G15700.1 | Symbols: | Thioredoxin superfamily protein | chr4:8937393-8937892
FORWARD LENGTH=500
Length=500
Score = 440 bits (238), Expect = 4e-123
Identities = 301/331 (91%), Gaps = 5/331 (2%)
Strand=Plus/Plus
Query 21 AATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAATTC 80
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 152 AATGGAGAATCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAACTC 211
Query 81 TTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 140
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TTGCTGCATGTCTCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGAT 271
Query 141 CTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTCAGCTTGG 200
|||||| | || ||||| | ||||||||| ||| ||||||||||||| |||||||| ||
Sbjct 272 CTATGAACTCGATGAGATTAGCAGAGGAAAGGAGATAGAGCATGCATTGGCTCAGCTCGG 331
Query 201 CTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 260
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GTGCAGCCCGACAGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATCA 391
Query 261 AGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCTTT 320
||||||||||||||||||||| || || || ||||||||||||| |||| ||| |||||
Sbjct 392 AGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCAATGCTTAAGCGCGCTGGAGCTTT 451
Query 321 ATGGCTTTGA-TTAAATATTATAAA-GGAAT 349
|||||||||| || || | ||||| |||||
Sbjct 452 ATGGCTTTGACTTCAA-A--ATAAATGGAAT 479
> AT4G15680.1 | Symbols: | Thioredoxin superfamily protein | chr4:8931652-8932295
FORWARD LENGTH=644
Length=644
Score = 403 bits (218), Expect = 5e-112
Identities = 293/330 (89%), Gaps = 2/330 (1%)
Strand=Plus/Plus
Query 4 TTTTACATTATAACATCAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTG 63
||| ||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 144 TTTCACATTATAATACCAATGGATAAGCTACAGAAGATGATCTCCGAGAAGTCGGTAGTG 203
Query 64 ATCTTTAGCAAGAATTCTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTT 123
||||||||||| || || || |||||||| ||||| ||||||||||||||| ||||| ||
Sbjct 204 ATCTTTAGCAAAAACTCATGTTGCATGTCTCACACTATCAAGACTCTCTTCATAGACTTT 263
Query 124 GGCGTGAACCCGACGATCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCAT 183
|||||||| || |||||||||||| |||| ||||||||||||||||| ||| |||||||
Sbjct 264 GGCGTGAATCCAACGATCTATGAGCTAGATGAGATCAACAGAGGAAAGGAGATAGAGCAA 323
Query 184 GCATTAGCTCAGCTTGGCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTT 243
||||| |||||||||||||| ||||| |||||||| |||||||| || ||||||||||||
Sbjct 324 GCATTGGCTCAGCTTGGCTGCAGCCCAACCGTGCCTGTGGTGTTTATTGGAGGGCAGCTT 383
Query 244 GTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTT 303
||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 384 GTTGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAATCGCTCTCTGGTTCCTATGCTA 443
Query 304 AA-ACGCGTTGGGGCTTTATGGCTTTGATT 332
|| | | ||||| || |||||||||||||
Sbjct 444 AAGAGG-GTTGGAGCACTATGGCTTTGATT 472
> AT4G15690.1 | Symbols: | Thioredoxin superfamily protein | chr4:8934324-8934921
FORWARD LENGTH=598
Length=598
Score = 372 bits (201), Expect = 1e-102
Identities = 273/309 (88%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 20 CAATGGAGAAGCTACAAAAGATGATCTCCGAGAAGTCGGTAGTGATCTTTAGCAAGAATT 79
|||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |
Sbjct 119 CAATGGAGAACCTACAGAAGATGATCTCTGAGAAGTCGGTAGTAATTTTTAGCAAGAACT 178
Query 80 CTTGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTGAACCCGACGA 139
| ||||||||||| || ||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 179 CATGCTGCATGTCTCATACAATTAAGACTCTCTTCTTAGACTTTGGCGTGAACCCGACTA 238
Query 140 TCTATGAGTTAGACGAGATCAACAGAGGAAAAGAGGTAGAGCATGCATTAGCTCAGCTTG 199
|||||||| | ||||||||||||| ||||| ||| ||||||| ||||| |||||||| |
Sbjct 239 TCTATGAGCTCGACGAGATCAACATAGGAAGGGAGATAGAGCAAGCATTGGCTCAGCTCG 298
Query 200 GCTGTAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTTGGTGGAGCCAATC 259
| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 GATGCAGCCCGACCGTTCCGGTGGTGTTCATTGGAGGGCAGCTTGTTGGTGGAGCCAATC 358
Query 260 AAGTCATGAGTCTCCATCTCAATCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCTT 319
|||||||||||||||||||||| || || || |||| ||||||||||| | ||| || |
Sbjct 359 AAGTCATGAGTCTCCATCTCAACCGCTCCCTTGTTCCTATGCTTAAACGTGCTGGAGCAT 418
Query 320 TATGGCTTT 328
|||||||||
Sbjct 419 TATGGCTTT 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16387286174
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5