BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946749

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15610.1 | Symbols:  | Uncharacterised protein family (UPF04...   977    0.0  


> AT4G15610.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr4:8909064-8910908 FORWARD LENGTH=947
Length=947

 Score =  977 bits (529),  Expect = 0.0
 Identities = 595/627 (95%), Gaps = 3/627 (0%)
 Strand=Plus/Plus

Query  1    TAACAAATCAAGATTAAGTTATGGGTTCTGATGAAACCAAATCGACGTTGGACACCGAGA  60
            |||||| ||||||||||| |||||| | | |||||||||||||||| |||||||||||||
Sbjct  79   TAACAATTCAAGATTAAGCTATGGG-T-T-ATGAAACCAAATCGACTTTGGACACCGAGA  135

Query  61   GATCAACCGTGCCAGGAAGCGGCACAACGACAAAGAGTTGTTGGATGACTCAAGTTGTCC  120
            |||| |||| |||||||| |||||| ||||| |||||||||| |||||||||||||||||
Sbjct  136  GATCGACCGCGCCAGGAACCGGCACCACGACGAAGAGTTGTTCGATGACTCAAGTTGTCC  195

Query  121  TAAGATTCGTTCTGTTTGCAGCCACTTTGACATCAATAGTGGTAATGGTTACAAGTAAAC  180
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  196  TAAGATTTGTTCTGTTTGCAGCCACTTTGACATCAATAGTGGTAATGGTTACAAGTAAAC  255

Query  181  AGACCAAGAACATTTTCATTCCTGGAACTCCCATTCGTATTCCTGCTGCAAAGTTCACCA  240
            |||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  256  AGACCAAGAATATATTCCTTCCTGGAACTCCCATTCGTATTCCTGCTGCAGAGTTCACCA  315

Query  241  ACTCACCGGCTCTTATATACTTTGTGGTAGCATTATCGGTGGCTTGCTTTTACAGCATTG  300
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct  316  ACTCACCGGCTCTTATATACTTTGTGGTAGCATTATCCGTGGCATGCTTTTACAGCATTG  375

Query  301  TGTCTACATTTGTCACCGTATCTGCTTTCAAGAAGCATTCCTGCTCTGCGATTCTCTTGC  360
            | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  376  TATCTACATTTGTCACCGTATCTGCTTTCAAGAAGCATTCCTGCTCTGCGGTTCTCTTGC  435

Query  361  TAAATCTTGCCATTATGGATGCGGTGATGGTGGGGATAGTGGCCTCAGCAACCGGAGCAG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  436  TAAATCTTGCCATTATGGATGCGGTGATGGTGGGGATAGTGGCCTCAGCAACCGGGGCAG  495

Query  421  GAGGTGGAGTAGCTTACCTTGGTCTGAAGGGAAACAAAGAAGTGAGATGGGGCAAAATCT  480
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  496  GAGGTGGAGTAGCTTACCTTGGTCTGAAGGGAAACAAAGAAGTTAGATGGGGCAAAATCT  555

Query  481  GTAATATCTACGACAAGTTTTGCCGTCATGTCGGAGGCGCAATCGCCGTCTCATTGTTTG  540
            || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  556  GTCATATCTACGACAAGTTTTGCCGTCATGTTGGAGGAGCAATCGCCGTCTCATTGTTTG  615

Query  541  CTTCGGTCAtcctcctcctcctctccatcatctctgtcctctccctctACAAGAAAATCC  600
            |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  616  CTTCGGTTGTCCTCCTCCTCCTATCCATCATCTCTGTCCTCTCCCTCTACAAGAAAATCC  675

Query  601  GTTGATTCACTTTCCTTGTTTCGTTGT  627
            ||||| ||||| || ||||||||||||
Sbjct  676  GTTGAGTCACTCTCTTTGTTTCGTTGT  702



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5