BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946752

Length=1262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27600.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/su...   108    2e-22


> AT3G27600.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/surp 
RNA-binding domain-containing protein | chr3:10223743-10224948 
REVERSE LENGTH=942
Length=942

 Score =  108 bits (58),  Expect = 2e-22
 Identities = 135/171 (79%), Gaps = 10/171 (6%)
 Strand=Plus/Plus

Query  1057  ATTGAGATCACAGTGCAGTCGTTATCGGAAAACGTGGCGAGTTTCAAGGAGAAAATAGCT  1116
             |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  685   ATTGAGAAAACAGTGCAGTCGTTATCTGAAAACGTGGCGAGTTTCAAGGAGAAAATAGCC  744

Query  1117  GAGGAGATTC--AA-ATTCC-AGCAAACACACACAAGTTA-AGT-GGAAAAGCAGGGGTT  1170
             | ||| |  |  || | ||| | || | | |  || || | | | |||||| | ||| ||
Sbjct  745   GCGGATAAACCGAAGAATCCCACCAGAGA-AG-CAGGTGATATTCGGAAAATCCGGG-TT  801

Query  1171  -TTAGACGACGACAACAAGTCACTTGCACATTACAATGTTGGAGTAGGAGA  1220
              ||| | ||| ||||||||||||| ||| |||| ||||| |||| ||||||
Sbjct  802   GTTAAAGGACAACAACAAGTCACTAGCATATTAAAATGTAGGAGCAGGAGA  852



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62047873620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5