BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946753
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15590.1 | Symbols: | transposable element gene | chr4:8900... 630 1e-179
> AT4G15590.1 | Symbols: | transposable element gene | chr4:8900245-8907255
REVERSE LENGTH=7011
Length=7011
Score = 630 bits (341), Expect = 1e-179
Identities = 451/502 (90%), Gaps = 16/502 (3%)
Strand=Plus/Plus
Query 1072 CCGCCTATATGACCGCCATTCTTGAGGCTTTTCTCGAACGTATTCTATGGGATCATGTTC 1131
|||| ||||||| | || ||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 6520 CCGCTTATATGAACACCGTTCTTGAGGGTTTTCTTGAACGTATTCTAT-GGATCGTGTTC 6578
Query 1132 AG-GAGCTTAAATGGCTTGATGGAGGGGAGAATTCTATGATTGAATGGCATAACTCTGCG 1190
| |||| ||| |||||||| ||||||||||||||||||||||| |||||||| |||| |
Sbjct 6579 -GCGAGCATAAGTGGCTTGAAGGAGGGGAGAATTCTATGATTGAGTGGCATAATTCTGTG 6637
Query 1191 TCCAAAGATTTTGTGGAGGATCATGAGTTGCTACCTATGCTTGAAATGTCTCCTCCTGCA 1250
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |
Sbjct 6638 TCCAAAGATTTTGTGGAGGATCAAGAGTTGCTACCTAAGCTTGAAATGCCTCCTCCT--A 6695
Query 1251 CCACTTCCTCCACAGAAGAGACCAGAGTTGGATGAGTCAGCCCTTGTTCCACTTGAGCCA 1310
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6696 -CA---CCTCCACAAAAGAGACCAGAGTTGGATGAGTCAGCCCTTGTTCCACTTGAGCCA 6751
Query 1311 GAAGACCAGTTTCTTGCACAACATGAGGGTTTGTCTATAATCAGGGTGATTTGTGTTCCC 1370
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 6752 GAAGACCAGTTTCTTGCCCAACATGAGGGTTTGTCTATTTTCAGGGTGATTTGTGTTCCC 6811
Query 1371 GACGG-GC--AAGTAATTAAGATCACAGTGCAGTCGTTGTCCGAAAACGTAGCAAGTTTG 1427
||||| | |||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 6812 GACGGAGGGGAAGTCATTAAGATCACAGTGCAGTCATTGTCTGAAAACGTAGCAAGTTTG 6871
Query 1428 AAGGAGAAAATAGCTGAGGTGGTCCAGATTCCAGCAAACAAACACATGTTAAGTGGAAAT 1487
||||||||||||||||||||||| || |||| |||||||||||| | |||||| || |
Sbjct 6872 AAGGAGAAAATAGCTGAGGTGGTTCAAATTCAAGCAAACAAACAGACGTTAAGGGGGT-T 6930
Query 1488 A-GAGCGGTTTTAAAGGACAATGATAGGTCACTTGCTTATTACAATGTGAAATCAGGAGC 1546
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 6931 AAGAGCGGTTTTAAAGGACAATAATAGGTCACTTGCTTATTACAATGTGAAAGCAGGAGA 6990
Query 1547 TAT-CTTAATACTGGACGTGGT 1567
||| || |||||||||||||||
Sbjct 6991 TATTCT-AATACTGGACGTGGT 7011
Score = 279 bits (151), Expect = 4e-74
Identities = 193/213 (91%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 789 AGGGTTCAGTCTCAAAGACTTGATCTGCCTAATTTTCTAGATTGTAGAGTTCTTGAAGGG 848
||||| |||||||||||||||| |||||||||| ||||| | |||||| ||||| |||||
Sbjct 6309 AGGGTCCAGTCTCAAAGACTTGTTCTGCCTAATCTTCTACAGTGTAGACTTCTTAAAGGG 6368
Query 849 ATGACGC-TCGA-GGAGCTTGATACCGTTAAGGTCACAGGGCAGTTTGTGGCGTGGTATG 906
||||| | || | ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 6369 ATGAC-CTTC-ACCGAGCTTGATACTGTTAAGGTCACAGCTCAGTTTGTGGCGTGGTATG 6426
Query 907 GGGATGTTTTTCGTGGGAAACTGATGGAAAGAGTGATGATGAACCATCAGTTTGAGTTTA 966
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 6427 GGGATGCTTTTCGTGGGAAACTGATGGAAAGAGTGATGATGGACAATCAGTTTGAGTTTA 6486
Query 967 TGAAGCAAACTGATTACAGGTTCTCTTTCTTCA 999
|||||||||||||||||| |||| |||||||||
Sbjct 6487 TGAAGCAAACTGATTACATGTTCGCTTTCTTCA 6519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78563852925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5