BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946759
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15545.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1611 0.0
> AT4G15545.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16520.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:8875918-8877799 FORWARD LENGTH=1260
Length=1260
Score = 1611 bits (872), Expect = 0.0
Identities = 987/1043 (95%), Gaps = 6/1043 (1%)
Strand=Plus/Plus
Query 7 ACAGAAAACGAGAAATGTCAGAG---GTagaagaagaagaagaagGATCAACAAATGCAA 63
||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||||
Sbjct 1 ACAGAAAACGAGAAATGTCAGAGATAGAAGAAGAAGAAGAAGAAGGATCAGCAAGTGCAA 60
Query 64 TTACAGGTTCGAGAAGTTTCGATCTTCCCGACGAACTTCTTCAAGTTCTACCGTCCGATC 123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTACAGGTTCGAGAAGTTTCGATCTTCCCGATGAACTTCTTCAAGTTCTACCGTCCGATC 120
Query 124 CATTCGAGCAGCTCGATGTAGCTCGCAAAATCACATCCATTGCTCTTTCGACACGTGTCT 183
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CATTCGAGCAGCTAGATGTAGCTCGCAAAATCACATCCATTGCTCTCTCGACACGTGTCT 180
Query 184 CTGCTCTCGAATCAGAGTCGTCGGATCTCCGGGAACTTCTCGCCGAGAAAGATAAAGAAA 243
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CAGCTCTCGAATCAGAGTCGTCGGATCTCCGGGAACTTCTCGCCGAGAAAGAAAAAGAAT 240
Query 244 TCGCCGAGCTACAATCTCACGTTGAGTCTCTTGACGCTTCTCTCTCCGATGCGTTTCATA 303
| | || || || ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 241 TTGAAGAACTCCAGTCTCACGTTGAGTCTCTCGAGGCTTCTCTTTCCGATGCGTTTCATA 300
Query 304 AGCTTTCTCAAGCTGATGGTGAAAAGGAGAATTTAATAAGAGAGAATGCTTCGTTGTCTA 363
||||||||| ||||||||||||||||||||| | |||||||| |||||||| |||||||
Sbjct 301 AGCTTTCTCTCGCTGATGGTGAAAAGGAGAATCTGATAAGAGAAAATGCTTCTTTGTCTA 360
Query 364 ATACTGTGAAGAGACTTCAGAGAGATGTCTCTAAGCTTGAGGGTTTTAGGAAGACGCTTA 423
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 ATACTGTCAAGAGACTTCAGAGAGATGTCTCAAAGCTTGAGGGTTTTAGGAAGACGCTTA 420
Query 424 TGATGTCTCTTCAAGATGATGACCAAAATGCAGGAACAACGCAAATCATCGCTAAGCCGA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGATGTCTCTTCAAGATGATGACCAAAATGCAGGAACAACGCAAATCATCGCTAAGCCGA 480
Query 484 CACCAAACGATGATGATACTCCATTTCAACCTTCAAAACATTCATCAATCCAATCTCAA- 542
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 CACCAAACGATGATGATACTCCATTTCAACCTTCAAGACATTCATCAATCCAATCTCAAC 540
Query 543 --GCTTCTGAAGCTATTGAACCAGCTACAACTGACAATGAAAACGATGCTCCTAAACCGA 600
||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 541 AAGCTTCTGAAGCCATTGAACCAGCTGCAACTGACAACGAAAACGATGCTCCTAAACCAA 600
Query 601 GTTTATCAGCCAGTTTTCCGTTAGTATCGCAAACTACTACGCCACGGCTTACTCCTCCTG 660
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 GTTTATCAGCTAGTCTTCCGTTAGTATCACAAACTACTACGCCACGGCTTACTCCTCCTG 660
Query 661 GTTCTCCACCAATCTTATCTGCTTCTGGTACCCCGAAAACAACTTCGAGACCTCTCTCTC 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 661 GTTCTCCACCAATCTTATCTGCTTCTGGTACACCGAAAACAACTTCGAGACCTATCTCTC 720
Query 721 CTCGACGCCATTCTGTATCATTTGCTACCACTAGAGGCATGTTTGATGATACTAGATCGT 780
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 721 CTCGACGCCATTCTGTATCGTTCGCTACCACTAGAGGCATGTTTGATGATACTAGATCTT 780
Query 781 CTATTTCAATCTCAGAGCCTGGATCACAAACCGCAAGAACTCGGGTTGACGGAAAAGAGT 840
|||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct 781 CTATTTCAATCTCAGAGCCTGGTTCACAAACTGCGAGAACTCGGGTTGATGGAAAAGAGT 840
Query 841 TCTTCCGACAAGTCAGGAGCCGATTATCTTACGAGCAATTTGGTGCATTTCTGGGAAATG 900
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 TCTTTCGACAAGTCAGGAGCCGATTATCTTACGAGCAATTTGGTGCATTTCTTGGAAATG 900
Query 901 TGAAGGATCTTAACGCTCACAAGCAAACAAGAGAAGAAACGCTTAGGAAAGCTGAAGAGA 960
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 TGAAGGATCTTAACGCCCACAAGCAAACAAGAGAAGAAACACTTAGGAAAGCTGAAGAGA 960
Query 961 TATTTGGAGGCGATAACAGAGATCTCTACGTCATATTCGAGGGCTTGATCACTCGCAACG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 TATTTGGAGGCGATAACAGAGATCTCTACGTCATATTCGAGGGCTTGATCACACGCAACG 1020
Query 1021 CTCACTGAGAGTTTGGATTCTTC 1043
|||||| ||||||||| ||||||
Sbjct 1021 CTCACTAAGAGTTTGGCTTCTTC 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5