BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946761
Length=2911
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15530.5 | Symbols: PPDK | pyruvate orthophosphate dikinase ... 4619 0.0
> AT4G15530.5 | Symbols: PPDK | pyruvate orthophosphate dikinase
| chr4:8864828-8870801 REVERSE LENGTH=2945
Length=2945
Score = 4619 bits (2501), Expect = 0.0
Identities = 2769/2900 (95%), Gaps = 11/2900 (0%)
Strand=Plus/Plus
Query 1 TGGTTTATGCTTTATAT----AAGAAAATGACAAGTATGATCGTGAAGACAACGCCGGAG 56
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 48 TGGTTTATGCTTTATATAAGAAAGAAAATGACAAGTATGATCGTGAAGACAACGCCGGAG 107
Query 57 CTCTTCAAAGGAAATGGAGTGTACCGTACGGATCATCTCGGCGAAAACCGAATGGTTAGT 116
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 108 CTCTTCAAAGGAAATGGAGTGTTCCGTACGGATCATCTCGGAGAAAACCGAATGGTTAGT 167
Query 117 CGATCAAACCGGCTAGGTGATGGATCCAACAGTTTCCCTAGAACCGGTACAATCCATTGC 176
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 168 CGATCAAACCGGCTAGGTGATGGATCAAACCGTTTCCCTAGAACCGGTACAATCCATTGC 227
Query 177 CAACGGTTAAGCATAGC-AAGAACCGGTTTGCATCGTGATACAAAGGCTCGAGCCATCCT 235
||||||||||||||||| ||| ||||||||||||||||| || |||||||||||||| ||
Sbjct 228 CAACGGTTAAGCATAGCAAAG-ACCGGTTTGCATCGTGAGACGAAGGCTCGAGCCATACT 286
Query 236 TGGCCTTGTGTCCGATCCGGCCGCTTCCATAGCCCAAAAGCGTGTATTCACCTTTGGGAA 295
| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 287 TAGCCCTGTGTCCGATCCGGCCGCTTCCATAGCCCAAAAGCGAGTATTCACCTTTGGAAA 346
Query 296 AGGAAGAAGCGAAGGCAACAAGGGCATGAAGTCCTTGTTGGGAGGGAAAGGAGCAAACCT 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 347 AGGAAGAAGCGAAGGCAACAAGGGCATGAAGTCCTTGTTGGGAGGGAAAGGAGCCAACCT 406
Query 356 GGCGGAGATGGCGAGCATAGGCTTGTCGGTGCCGCCGGGGCTAACCATATCTACGGAGGC 415
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 407 GGCGGAGATGGCTAGCATAGGCTTGTCGGTGCCGCCGGGGCTAACCATATCGACGGAGGC 466
Query 416 TTGTCAGCAGTATCAGATCGCCGGCAAGAAGCTTCCAGAAGGTTTATGGGAAGAGATCTT 475
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 467 TTGTCAGCAGTATCAGATCGCCGGCAAAAAGCTTCCAGAAGGTTTATGGGAAGAGATCTT 526
Query 476 GGAAGGTCTTTGCTTCATCGAACGTGACATTGGAGCTTCCCTCGCCGATCCCTCTAAGCC 535
||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 527 AGAAGGTCTTAGCTTCATCGAACGTGACATTGGAGCTTCCCTCGCTGATCCCTCCAAGCC 586
Query 536 ACTCCTCCTCTCTGTTCGCTCCGGCGCCGCCATCTCAATGCCTGGTATGATGGACACTGT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 ACTCCTCCTCTCTGTTCGCTCCGGCGCCGCCATCTCAATGCCTGGTATGATGGACACTGT 646
Query 596 ACTTAACCTTGGCTTAAACGACCAAGTCGTCGTTGGTTTGGCTGCCAAAAGCGGAGAGCG 655
||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 647 ACTTAACCTTGGCTTGAACGACCAAGTCGTCGTTGGTCTGGCCGCAAAAAGCGGAGAGCG 706
Query 656 TTTTGCTTACGATTCGTTCCGGCGTTTTCTTGATATGTTTGGCGATGTTGTGTTGGGAAT 715
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 707 TTTTGCTTACGATTCGTTCCGGCGTTTTCTTGATATGTTTGGTGATGTTGTGATGGGAAT 766
Query 716 TCCACACGCCAAGTTTGAAGAGAAGTTAGAGAGGATGAAGGAGAGAAAAGGAGTAAAAAA 775
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 767 TCCACACGCCAAGTTTGAAGAGAAGTTAGAGAGAATGAAGGAGAGGAAAGGAGTTAAAAA 826
Query 776 TGACACAGAATTAAGCGCCACTGATCTTAAAGAATTGGTTGAGCAGTACAAGAGTGTTTA 835
|||||| || |||||||| ||||||| || |||||||||||||||||||||||||||||
Sbjct 827 TGACACTGACTTAAGCGCGGCTGATCTCAAGGAATTGGTTGAGCAGTACAAGAGTGTTTA 886
Query 836 CGTAGAGGCCAAGGGTCAAGAGTTTCCTTCAGATCCGAAGAAGCAATTGGAGCTAGCGAT 895
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 887 CTTAGAGGCCAAGGGTCAAGAGTTTCCTTCAGATCCAAAGAAGCAATTGGAGCTAGCGAT 946
Query 896 TGAAGCGGTATTCGATTCTTGGGATAGCCCTAGAGCGAACAAGTACAGAAGTATTAACCA 955
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 947 TGAAGCGGTATTCGATTCTTGGGATAGCCCGAGAGCGAACAAGTACAGAAGTATTAACCA 1006
Query 956 GATAACCGGATTGAAGGGAACCGCGGTAAACATTCAGTGTATGGTGTTTGGAAACATGGG 1015
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1007 GATAACTGGATTGAAAGGAACCGCGGTTAACATTCAGTGTATGGTGTTTGGAAACATGGG 1066
Query 1016 GGACACTTCAGGGACTGGTGTTCTCTTCACCAGGAACCCTAGCACCGGAGAGAAGAAGCT 1075
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1067 GGACACTTCAGGGACTGGTGTTCTCTTCACTAGGAACCCTAGCACAGGAGAGAAGAAGCT 1126
Query 1076 CTACGGAGAGTTTCTAGTCAATGCTCAGGGAGAGGATGTGGTGGCAGGGATTAGAACACC 1135
|| || ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1127 TTATGGCGAGTTTCTAGTTAATGCTCAGGGAGAGGATGTGGTTGCAGGGATAAGAACACC 1186
Query 1136 CGAAGATTTGGATACAATGAGGAGATTAATGCCTGAGGCTTATGCAGAACTTGTTGAGAA 1195
||||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||
Sbjct 1187 AGAAGATTTGGATACAATGAAGAGATTTATGCCTGAGGCTTACGCTGAACTTGTTGAGAA 1246
Query 1196 CTGCAACATCTTAGAAAGACATTACAAAGACATGATGGATATCGAATTCACCGTACAAGA 1255
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1247 CTGCAACATCTTAGAAAGACATTACAAAGACATGATGGATATTGAATTCACAGTACAAGA 1306
Query 1256 GGAGAGATTGTGGATGCTGCAATGTAGAGCGGGTAAGCGAACGGGTAAAGGCGCGGTGAA 1315
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1307 AGAGAGATTGTGGATGCTGCAATGCAGAGCGGGTAAGCGAACGGGTAAAGGCGCCGTGAA 1366
Query 1316 GATAGCAGTTGATATGGTAAGTGAAGGGCTTGTAGATAAATCTTCTGCAATCAAAATGGT 1375
||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||
Sbjct 1367 GATAGCAGTTGATATGGTAGGTGAAGGGCTTGTTGAGAAATCTTCTGCTATCAAAATGGT 1426
Query 1376 GGAGCCTCAACATCTTGATCAACTACTTCACCCACAGTTTCATGATCCATCGGGGTATCG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GGAGCCTCAACATCTTGATCAACTACTTCACCCACAGTTTCATGATCCATCGGGGTATCG 1486
Query 1436 TGAAAAAGTTGTGGCGAAAGGCTTACCGGCGTCACCAGGAGCTGCGGTTGGGCAGGTTGT 1495
||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1487 TGAAAAAGTGGTGGCCAAAGGCTTACCTGCGTCACCAGGAGCGGCGGTTGGACAGGTTGT 1546
Query 1496 GTTCACGGCGGAGGAAGCCGAAGCTTGGCATTCTCAAGGAAAAACCGTGATTCTAGTTCG 1555
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||
Sbjct 1547 GTTCACGGCGGAGGAAGCCGAAGCTTGGCATTCTCAGGGTAAAACTGTGATTCTGGTTCG 1606
Query 1556 AACGGAGACAAGCCCTGATGATGTTGGAGGTATGCACGCAGCCGAAGGTATATTGACGGC 1615
||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1607 AACTGAGACAAGCCCTGACGATGTGGGAGGTATGCACGCAGCGGAAGGTATATTGACGGC 1666
Query 1616 GAGAGGTGGAATGACGTCACACGCGGCGGTTGTTGCTCGCGGTTGGGGAAAATGTTGCAT 1675
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1667 TAGAGGAGGAATGACGTCACACGCGGCTGTTGTTGCTCGCGGTTGGGGAAAATGTTGCAT 1726
Query 1676 CGCTGGTTGCTCCGAAATTCGTGTCGACGAGAACCATAAGGTTCTATTGATTGGAGATTT 1735
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1727 TGCTGGTTGTTCCGAGATTCGTGTCGACGAGAACCACAAGGTTCTATTGATTGGAGATTT 1786
Query 1736 GACTATTCATGAAGGCGAATGGATCTCGATGAACGGATCAACCGGTGAGGTTATATTAGG 1795
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1787 GACGATTAATGAAGGCGAATGGATCTCAATGAACGGATCAACCGGTGAGGTTATATTAGG 1846
Query 1796 GAAACAAGCATTGGCTCCTCCGGCTTTGAGTCCAGATTTAGAGACTTTCATGTCCTGGGC 1855
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1847 GAAACAAGCATTGGCTCCTCCGGCTTTAAGTCCAGATTTGGAGACTTTCATGTCCTGGGC 1906
Query 1856 TGATGCAATCAGACGTCTCAAGGTTATGGCGAATGCGGATACCCCTGAAGACGCGATTGC 1915
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1907 TGATGCAATCAGACGTCTCAAGGTTATGGCGAATGCGGATACACCTGAAGACGCCATTGC 1966
Query 1916 AGCAAGGAAAAACGGCGCTCAAGGGATCGGGCTTTGTAGGACCGAACATATGTTCTTTGG 1975
||| ||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 1967 AGCTAGGAAAAACGGAGCTCAAGGAATCGGGCTTTGTAGGACAGAGCATATGTTCTTTGG 2026
Query 1976 CGCAGATAGGATTAAAGCAGTGAGAAAGATGATAATGGCGGTAACAACAGAGCAAAGGAA 2035
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027 AGCAGATAGGATTAAAGCAGTGAGAAAGATGATAATGGCGGTAACAACAGAGCAAAGGAA 2086
Query 2036 AGCTTCTCTCGACATCTTGCTTCCTTACCAACGTTCGGATTTCGAAGGGATCTTCCGCGC 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2087 AGCTTCTCTCGACATCTTGCTTCCTTACCAACGTTCGGATTTCGAAGGGATCTTCCGTGC 2146
Query 2096 TATGGATGGTTTACCGGTAACAATTCGCCTGTTAGACCCTCCACTTCACGAGTTTCTCCC 2155
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 2147 TATGGATGGTTTACCGGTAACAATCCGTTTGTTAGACCCTCCGCTTCACGAGTTTCTCCC 2206
Query 2156 GGAAGGCGATTTGGACAACATTGTAAATGAGTTAGCTGCAGAAACAGGCGTGAAAGAAGA 2215
||||||||| ||||||||||||||| ||||| |||||| |||||| || |||||||||||
Sbjct 2207 GGAAGGCGACTTGGACAACATTGTACATGAGCTAGCTGAAGAAACTGGTGTGAAAGAAGA 2266
Query 2216 CGAAGTCTTGTCACGAATAGAGAAACTCTCTGAAGTGAATCCAATGCTTGGTTTCCGCGG 2275
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 TGAAGTCTTGTCACGGATAGAGAAACTCTCTGAAGTGAATCCAATGCTTGGTTTCCGCGG 2326
Query 2276 TTGCAGGCTCGGAATATCGTATCCTGAGCTAACGGAAATGCAAGCGCGTGCAATTTTTGA 2335
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2327 TTGCAGGCTCGGAATATCGTATCCAGAGCTAACGGAGATGCAAGCGCGTGCAATTTTTGA 2386
Query 2336 AGCAGCAGCGTCAATGCAGGACCAAGGTGTTACTGTTC-TTCCTGAGATTATGGTTCCAC 2394
||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2387 AGCTGCAGCGTCAATGCAGGACCAAGGTGTTACTG-TCATTCCTGAGATTATGGTTCCAC 2445
Query 2395 TTGTAGGAACTCCTCAGGAATTGGGTCACCAAGTTAATGTAATCCGAAAAGTGGCAAAGA 2454
||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||
Sbjct 2446 TTGTAGGAACTCCTCAGGAATTGGGTCACCAAGTTGATGTAATTCGTAAAGTTGCAAAGA 2505
Query 2455 AAGTATTTGCTGAGAAGGGTCATACCGTGAGCTACAAGGTTGGGACAATGATTGAGATCC 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 AAGTATTTGCTGAGAAGGGTCATACCGTGAGCTACAAGGTTGGGACAATGATTGAGATCC 2565
Query 2515 CTCGAGCCGCGCTCATTGCAGATGAGATTGCGAAAGAGGCGGAGTTTTTCTCGTTCGGGA 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2566 CTCGAGCCGCGCTCATTGCAGATGAGATTGCGAAAGAGGCGGAGTTTTTCTCGTTCGGGA 2625
Query 2575 CAAATGACTTGACGCAGATGACGTTTGGATACAGTAGAGACGATGTTGGCAAGTTTCTAC 2634
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2626 CAAACGACTTGACGCAGATGACGTTTGGATACAGTAGAGACGATGTCGGCAAGTTTCTAC 2685
Query 2635 CGATTTACCTCGCCCAAGGAATCTTACAGCACGACCCTTTTGAGGTTCTTGATCAGCAAG 2694
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2686 CGATTTACCTCGCCAAAGGAATCTTACAGCACGACCCTTTTGAGGTTCTTGATCAGCAAG 2745
Query 2695 GTGTAGGGCAATTGATCAAGATGGCGACAGAAAAAGGACGAGCAGCTAGGCCTAGCCTCA 2754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2746 GTGTAGGGCAATTGATCAAGATGGCGACAGAAAAAGGACGAGCAGCTAGGCCTAGCCTCA 2805
Query 2755 AGGTTGGGATATGTGGAGAACATGGAGGAGATCCATCGTCTGTGGGATTCTTTGCTGAAG 2814
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2806 AGGTTGGGATATGTGGAGAACATGGAGGAGATCCATCTTCTGTGGGATTCTTTGCTGAAG 2865
Query 2815 CAGGACTTGACTATGTCTCTTGTTCTCCTTTCAGAGTTCCAATTGCAAGGCTTGCAGCTG 2874
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2866 CAGGACTTGACTATGTCTCTTGTTCTCCTTTCAGGGTTCCAATTGCAAGGCTTGCAGCTG 2925
Query 2875 CTCAAGT--T-GTTGCATGA 2891
||||||| | |||||||||
Sbjct 2926 CTCAAGTAGTTGTTGCATGA 2945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144681463612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5