BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946766
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15490.1 | Symbols: UGT84A3 | UDP-Glycosyltransferase superf... 1075 0.0
AT4G15500.1 | Symbols: UGT84A4 | UDP-Glycosyltransferase superf... 575 3e-163
AT4G15480.1 | Symbols: UGT84A1 | UDP-Glycosyltransferase superf... 158 1e-37
> AT4G15490.1 | Symbols: UGT84A3 | UDP-Glycosyltransferase superfamily
protein | chr4:8852698-8854545 REVERSE LENGTH=1848
Length=1848
Score = 1075 bits (582), Expect = 0.0
Identities = 749/831 (90%), Gaps = 6/831 (1%)
Strand=Plus/Plus
Query 1 CTTATAGAAAATAGAAATCCATGGAACCGTCTCCACTTCCTCATGTAATGCTCGTATCTT 60
|||| ||||| |||||||||||||| ||||||| | | ||||||| |||||||||||||
Sbjct 223 CTTAAAGAAACTAGAAATCCATGGACCCGTCTCGTCATACTCATGTGATGCTCGTATCTT 282
Query 61 ACCCAGGCCAAGGTCACATAAGCCCTCTTCTTCGTCTCGGAACGCTTATAGCCTCTAAAG 120
||| |||||||||||| ||| |||||| ||||||||||||| ||| |||||||||||||
Sbjct 283 TCCCCGGCCAAGGTCACGTAAACCCTCTACTTCGTCTCGGAAAGCTCATAGCCTCTAAAG 342
Query 121 GCTTAATCGTCACCTTTGTTACCACAGAGCAGCCATGGGGCAAAAAGATGCGTCAAGCCA 180
||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 343 GCTTACTCGTCACCTTTGTCACCACAGAGAAGCCATGGGGCAAGAAGATGCGTCAAGCCA 402
Query 181 ACAAGATTCAAGAAGGCGTGCTCAAACCCGTCGGTCTAGGTTTCCTCCGGTTCGAGTTCT 240
||||||||||||| || ||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 403 ACAAGATTCAAGACGGTGTGCTCAAACCGGTCGGTCTAGGTTTCATCCGGTTTGAGTTCT 462
Query 241 TCTCTGACGGCTTAACTGATGACGACGAAAAAAGAACCGACTTCAATGCCTTCCGACCAA 300
||||||||||||| | || ||||| ||||||||| ||||||| ||||||||||||||
Sbjct 463 TCTCTGACGGCTTCGCCGACGACGATGAAAAAAGATTCGACTTCGATGCCTTCCGACCAC 522
Query 301 ACATTGAAGCTGTCGGAAAACAAGAGATCAAAAATCTCGTTAAGAGATATAACAAGGAAT 360
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 523 ACCTTGAAGCTGTCGGAAAACAAGAGATCAAGAATCTCGTTAAGAGATATAACAAGGAGC 582
Query 361 CGGTGACATGTCTTATAAACAACGCTTATGTGCCGTGGGTATGTGACGTGGCCGAGGAGC 420
||||||| ||||| ||||||||||||| ||| || ||||||||||| || ||||||||||
Sbjct 583 CGGTGACGTGTCTCATAAACAACGCTTTTGTCCCATGGGTATGTGATGTCGCCGAGGAGC 642
Query 421 TTCAAATTCCTTCTGCTGTTCTATGGGTCCAGTCTTGCGCTTGTCTCTCTGCTTATTATT 480
|||| || ||||| ||||||||||||||||||||||| ||||||||| | |||||||| |
Sbjct 643 TTCACATCCCTTCGGCTGTTCTATGGGTCCAGTCTTGTGCTTGTCTCACGGCTTATTACT 702
Query 481 ATTACCACCACGGGTTAGTTAAGTTTCCGACCAAAACCGAGCCGGACATC-GACGTTGAA 539
||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 703 ATTACCACCACCGGTTAGTTAAGTTCCCGACCAAAACCGAGCCGGACATCAG-CGTTGAA 761
Query 540 ATCCCTTGCTTGCCATTATTAAAGCATGACGAGATCCCAAGTTTTCTTCACACTTCGTCT 599
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 762 ATCCCTTGCTTGCCATTGTTAAAGCATGACGAGATCCCAAGCTTTCTTCACCCTTCGTCT 821
Query 600 CCTTATACACCTTACGGAGA-AGTCATTTTAGACCAATTCAAGCGACTCGAAAACGACAA 658
|| |||||| ||| ||||| | ||||||||||||| || ||| || |||||||| ||||
Sbjct 822 CCGTATACAGCTTTTGGAGATA-TCATTTTAGACCAGTTAAAGAGATTCGAAAACCACAA 880
Query 659 GCCTTTCTATCTTTTCATCGACACTTTCCGCGAACTAGAAAAAGATATCATCGACCACAT 718
| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 881 GTCTTTCTATCTTTTCATCGACACTTTTCGCGAACTAGAAAAAGACATCATGGACCACAT 940
Query 719 GTCA-AACCTTTGTCCTCAAGCCATCATCAGCCCTGTCGGTCCGCTCTTCAAGATGGCTG 777
|||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 941 GTCACAAC-TTTGTCCTCAAGCCATCATCAGTCCTGTCGGTCCGCTCTTCAAGATGGCTC 999
Query 778 AAACCATAAGCTCTGACGTTAAAGGAGATATCTCCGAGCCAGCGAGTGACT 828
||||| | || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1000 AAACCTTGAGTTCTGACGTTAAGGGAGATATATCCGAGCCAGCGAGTGACT 1050
Score = 549 bits (297), Expect = 2e-155
Identities = 331/348 (95%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 829 CCAACTTGAAGCAAGAGCAGATGGAGGAGATCGCTCATGGCGTTTTGAGCTCTGGCTTGT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CCAACTTGAAGCAAGAGCAGATGGAGGAGATCGCTCATGGCGTTTTGAGCTCTGGCTTGT 1173
Query 889 CGTTCTTATGGGTAGTTCGGCCTCCCATGGAAGGGTCACTTGTAGAACCACATGTTTTGC 948
|| |||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1174 CGGTCTTATGGGTGGTTCGGCCTCCCATGGAAGGGACATTTGTAGAACCACATGTTTTGC 1233
Query 949 CTCGAGAGCTCGAAGAGATGGGTAAAATCGTGGAATGGTGTCCCCAAGAGAGAGTGTTGG 1008
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1234 CTCGAGAGCTCGAAGAAAAGGGTAAAATCGTGGAATGGTGTCCCCAAGAGAGAGTCTTGG 1293
Query 1009 CTCATCCTGCAATTGCTTGCTTCTTAAGCCACTGCGGATGGAACTCGACAATGGAGGCTT 1068
|||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1294 CTCATCCTGCGATTGCTTGTTTCTTAAGTCACTGCGGATGGAACTCGACAATGGAGGCTT 1353
Query 1069 TAACTTCCGGAGTCCCTGTTGTTTGTTTTCCGCAATGGGGAGATCAAGTGACTGATGATG 1128
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1354 TAACTGCCGGAGTCCCCGTTGTTTGTTTTCCGCAATGGGGAGATCAAGTGACTGATGCGG 1413
Query 1129 TGTACTTGGTTGATGTTTTCAAGCCATGAGTGAGACTAGGCCGCGGAG 1176
||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 1414 TGTACTTGGCTGATGTTTTCAAGACAGGAGTGAGACTAGGCCGCGGAG 1461
> AT4G15500.1 | Symbols: UGT84A4 | UDP-Glycosyltransferase superfamily
protein | chr4:8856988-8858572 REVERSE LENGTH=1585
Length=1585
Score = 575 bits (311), Expect = 3e-163
Identities = 647/804 (80%), Gaps = 43/804 (5%)
Strand=Plus/Plus
Query 39 CCTCATGTAATGCTCGTATC-TTACCCAGGCCAAGGTCACATAAGCCCTCTTCTTCGTCT 97
|||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 72 CCTCATGTGATGCTCGTATCATT-CCCAGGGCAAGGTCACATAAGCCCTCTTCTTCGTCT 130
Query 98 CGGAACGCTTATAGCCTCTAAAGGCTTAATCGTCACCTTTGTTACCACAGAGCAGCCATG 157
||||| | | || ||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 131 CGGAAAGATCATTGCCTCTAAAGGCTTAATCGTCACCTTTGTAACCACAGAGGAACCATT 190
Query 158 GGGCAAAAAGATGCGTCAAGCCAACAAGATTCAAGAAGGCGTGCTCAAACCCGTCGGTCT 217
|||||| |||||||||||||||||||| |||||||| || ||||||||||| ||||| ||
Sbjct 191 GGGCAAGAAGATGCGTCAAGCCAACAATATTCAAGACGGTGTGCTCAAACCGGTCGGGCT 250
Query 218 AGGTTTCCTCCGGTTCGAGTTCTTCTCTGACGGCTTAACTGATGACGACGAAAAAAGAAC 277
|||||| |||||||||||||||||| || || || || | | || ||| |||
Sbjct 251 AGGTTTTCTCCGGTTCGAGTTCTTCGAGGATGGATT---TG-T--CTAC-AAA---GAA- 299
Query 278 CGACTTCAATGCCTTCCGACCAAA-CA-TTGAAGCTGTC-GGAAAACAAGAGATCAAAAA 334
||||| || || | | ||| || |||||| | || ||||||| ||||||||| ||
Sbjct 300 -GACTTTGATTTGTTACAA--AAATCACTTGAAGTT-TCCGGAAAACGAGAGATCAAGAA 355
Query 335 TCTCGTTAAGAGATATAACAAGGAATCGGTGACATGTCTTATAAACAACGC-TTATGTGC 393
||| || |||| |||| | ||| || | |||| |||||| ||||| || || || ||| |
Sbjct 356 TCTTGTCAAGAAATATGAGAAGCAACCAGTGAGATGTCTCATAAATAATGCCTT-TGTTC 414
Query 394 CGTGGGTATGTGACGTGGCCGAGGAGCTTCAAATTCCTTCTGCTGTTCTATGGGTCCAGT 453
| ||||| |||||| | ||||||||||||||||| || || |||||||| ||||||||||
Sbjct 415 CATGGGTTTGTGACATAGCCGAGGAGCTTCAAATCCCATCAGCTGTTCTTTGGGTCCAGT 474
Query 454 CTTGCGCTTGTCTCTCTGCTTATTATTATTACCACCACGGGTTAGTTAAGTTTCCGACCA 513
|||| ||||| ||| | |||||||| |||||||||||| |||||||||||||||||||
Sbjct 475 CTTGTGCTTGCCTCGCCGCTTATTACTATTACCACCACCAGTTAGTTAAGTTTCCGACCG 534
Query 514 AAACCGAGCCGGACATCGAC-GTTGAAATCCCTTGCTTGCCATTA---TTAAAGCATGAC 569
||||||||||||| || || ||||| |||||| | ||||||| || |||||||||
Sbjct 535 AAACCGAGCCGGAAATA-ACCGTTGACGTCCCTTTCAAGCCATTAACATTGAAGCATGAC 593
Query 570 GAGATCCCAAGTTTTCTTCACACTTCGTCTCCT-TATACACCT-TACGGAGAAGT-C-AT 625
|||||||| || ||||||||| |||| ||||| | | | | | || |||| || | ||
Sbjct 594 GAGATCCCTAGCTTTCTTCACCCTTCCTCTCCGCTGTCCTC-TATA-GGAG--GTACCAT 649
Query 626 TTTAGACCA-ATTCAAGCGACTCGAAAACGACAAGCCTTTCTATCTTTTCATCGACACTT 684
|||||| || || ||||||||| | |||||||||||| | || ||||||| ||||
Sbjct 650 TTTAGAGCAGAT-CAAGCGACTT-----C-ACAAGCCTTTCTCTGTTCTCATCGAAACTT 702
Query 685 TCCGCGAACTAGAAAAAGATATCATCGACCACATGTCAAACCTTTGTCCTCAAGCCATCA 744
| | ||||| |||||||||| ||| ||||||||||| | || || ||||||| || |
Sbjct 703 TTCAAGAACTTGAAAAAGATACCATTGACCACATGTCCCAGCTCTGCCCTCAAGTCAACT 762
Query 745 TCAGCCCTGTCGGTCCGCTCTTCAAGATGGCTGAAACCATAAGCTCTGACGTTAAAGGAG 804
||| ||| |||||||||| || | |||||| |||||||||| |||||| | || ||||
Sbjct 763 TCAACCCCATCGGTCCGCTTTTTACTATGGCTAAAACCATAAGGTCTGACATCAAGGGAG 822
Query 805 ATATCTCCGAGCCAGCGAGTGACT 828
| |||||| |||||| |||||||
Sbjct 823 ACATCTCCAAGCCAGATAGTGACT 846
> AT4G15480.1 | Symbols: UGT84A1 | UDP-Glycosyltransferase superfamily
protein | chr4:8848801-8850516 REVERSE LENGTH=1716
Length=1716
Score = 158 bits (85), Expect = 1e-37
Identities = 166/204 (81%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 978 GTGGAATGGTGTCCC-CAAGAG-AGAGTGTTGGCTCATCCTGCAATTGCTTGCTTCTTAA 1035
||||| ||||| ||| |||||| | ||| ||| |||||||| || | || |||||| | |
Sbjct 1101 GTGGATTGGTG-CCCACAAGAGCA-AGTCTTGTCTCATCCTTCAGTGGCATGCTTCGTGA 1158
Query 1036 GC-CACTGCGGATGGAACTCGACAATGGAGGCTTTAACTTCCGGAGTCCCTGTTGTTTGT 1094
| || || |||||||||||||||||||| |||| |||| || || || || ||||||
Sbjct 1159 -CTCATTGTGGATGGAACTCGACAATGGAATCTTTGTCTTCAGGTGTTCCGGTGGTTTGT 1217
Query 1095 TTTCCGCAATGGGGAGATCAAGTGACTGATG-ATGTGTACTTGGTTGATGTTTTCAAG-C 1152
| ||||||||||||||||||||||||||||| | ||||| ||| | |||||||||||| |
Sbjct 1218 TGTCCGCAATGGGGAGATCAAGTGACTGATGCA-GTGTATTTGATCGATGTTTTCAAGAC 1276
Query 1153 CATGAGTGAGACTAGGCCGCGGAG 1176
| | || ||||||||||| ||||
Sbjct 1277 CGGG-GTTAGACTAGGCCGTGGAG 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57780827295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5