BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946772

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15460.1 | Symbols:  | glycine-rich protein | chr4:8841420-8...   237    7e-62


> AT4G15460.1 | Symbols:  | glycine-rich protein | chr4:8841420-8841866 
REVERSE LENGTH=447
Length=447

 Score =  237 bits (128),  Expect = 7e-62
 Identities = 228/272 (84%), Gaps = 23/272 (8%)
 Strand=Plus/Plus

Query  145  GTGGAGGAGGAGGTCATGCTAGTGTAGGAGGTGGTCATGCTAGTGCAGGAGGTGCTCATG  204
            |||||||||| |||||||||||||||||||| || |||||||||| |||||||| |||||
Sbjct  197  GTGGAGGAGGTGGTCATGCTAGTGTAGGAGGAGGCCATGCTAGTGGAGGAGGTGGTCATG  256

Query  205  CTGTTGAAGGAGGAGGCCATGCTGTTGCAGGAGGAGGCCATGCTGCTGGAAGCGCTGGTG  264
            |||||||||||||||||||||||| ||  | ||| ||   ||  || |||  |  |||  
Sbjct  257  CTGTTGAAGGAGGAGGCCATGCTGGTG--G-AGGCGG---TG--GC-GGA--CA-TGG--  302

Query  265  GCCGTGGAGAAGAAGAAGGTGGGCATATGATCGGAAGAGGCGGCGGTATGGTTCATCGAC  324
                   |||||||||||||||||||  |||||||||||| || ||||||||||||||||
Sbjct  303  -------AGAAGAAGAAGGTGGGCATGGGATCGGAAGAGGTGGTGGTATGGTTCATCGAC  355

Query  325  CAGCAACGAGGAACGGAGAG-TCTACACTAATTACTCCTTTTGCCGATGGATCTGCAATT  383
            |||| ||||||||||||| | |||||||||| || ||| |||| |||||||||| ||| |
Sbjct  356  CAGCGACGAGGAACGGAG-GCTCTACACTAACTATTCCCTTTGTCGATGGATCTACAACT  414

Query  384  GTTTTCATGATCATCTTTTTTCTATTTAACTA  415
            |||||||||||||| |||||| ||||||||||
Sbjct  415  GTTTTCATGATCATATTTTTTTTATTTAACTA  446


 Score =  213 bits (115),  Expect = 1e-54
 Identities = 202/241 (84%), Gaps = 17/241 (7%)
 Strand=Plus/Plus

Query  21   ATGAGAATCACCAAGACTCGAGCACACTTTGTTACCAATTATGCCGTGAAACTCGCCGTC  80
            |||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct  1    ATGAAAATCACGAAGACTCGAGCACACTTTGTTACCAATTATGCAGCGAAACTCGCCGTC  60

Query  81   CTGCTAATCATCACTTTACTTCTCTTCAAGTGTACCACCGTTGTTGCC---GG---TGCT  134
            || ||||| |||||||||||| |  |||| ||||||||||| ||||||   ||   || |
Sbjct  61   CTTCTAATTATCACTTTACTTTTAGTCAATTGTACCACCGTGGTTGCCAAAGGCGGTGGT  120

Query  135  GGAG-C--TCACGGTGGAGGAGGAGGTC-ATGCTAGTGTAGGAGGTGGTCATGCTAGTGC  190
            |||| |  |||||||||||| |||| || ||| |||||| ||||||| ||||||||||| 
Sbjct  121  GGAGGCGCTCACGGTGGAGGTGGAG-TCCATGTTAGTGTCGGAGGTGCTCATGCTAGTGT  179

Query  191  AGGAGGTG-CTCATGCT-GTTGAAGGAGGAGGCCATGCT-GTTGCAGGAGGAGGCCATGC  247
            |||||| | | |||||| || || ||||| || |||||| || | |||||||||||||||
Sbjct  180  AGGAGGAGGC-CATGCTAGTGGA-GGAGGTGGTCATGCTAGT-GTAGGAGGAGGCCATGC  236

Query  248  T  248
            |
Sbjct  237  T  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5