BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946777

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20240.1 | Symbols: CYP71A27 | cytochrome P450, family 71, s...   523    6e-148


> AT4G20240.1 | Symbols: CYP71A27 | cytochrome P450, family 71, 
subfamily A, polypeptide 27 | chr4:10931493-10934212 REVERSE 
LENGTH=1608
Length=1608

 Score =  523 bits (283),  Expect = 6e-148
 Identities = 379/426 (89%), Gaps = 4/426 (1%)
 Strand=Plus/Plus

Query  112   GAGGGACTACGGTTACATCCTTCTGGTCCATTATTGACCAGAC-ATCGACTGAAGATGTC  170
             ||||| |||||||| ||||| ||||||||| |||||  ||||| | | | ||||||||||
Sbjct  1066  GAGGGGCTACGGTTGCATCCCTCTGGTCCACTATTGTTCAGACTACCAAGTGAAGATGTC  1125

Query  171   CAACTAAAGATATATGACATTGCTGCAGGGACACAGGTAATAATCAATGCTTGGGCACTC  230
             ||| |||||  |||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct  1126  CAATTAAAGGGATATGACATTTCTGCAGGGACACATGTCATAATCAATGCTTGGGCACTC  1185

Query  231   CAACGAAACCCTTCGATATGGGGACATGATG-CAGAAGAATATAGACCAGAGAGGCATTT  289
             |||||||||||| |||||||||| | ||||| || | ||||||||||| ||||| |||||
Sbjct  1186  CAACGAAACCCTGCGATATGGGGGCTTGATGCCA-ATGAATATAGACCGGAGAGACATTT  1244

Query  290   TGGTTTGAACTTGGATTTTAATGGTACTGATTCCAAGTTCGTTCCATTTGGAGCAGGAAG  349
             ||||  ||| |||||||| ||  ||||||||||||| |||||||||||||||||||| ||
Sbjct  1245  TGGTACGAATTTGGATTTCAA-CGTACTGATTCCAAATTCGTTCCATTTGGAGCAGGGAG  1303

Query  350   AAGCCTTTGCCCCGGGATCGGATTTTCTATGGTCTTGTCCAAATTGACACTAGCCAACCT  409
             ||| |||||||| || |||||||||||| |||| |||||||||||| |||||||||||||
Sbjct  1304  AAGACTTTGCCCTGGAATCGGATTTTCTTTGGTTTTGTCCAAATTGGCACTAGCCAACCT  1363

Query  410   TGTGAAACGGTTCAACTGGAGACTCGAGGTCGGACCAGGGGGAGATGATAAACCTGATCT  469
             ||||||||| ||||||||||||||| ||||||||||||  ||||||||||| ||||||||
Sbjct  1364  TGTGAAACGATTCAACTGGAGACTCAAGGTCGGACCAGTAGGAGATGATAAGCCTGATCT  1423

Query  470   AGCTGAAGCATCTGGTATTGATGTTTGCCGCAAGTTTCCTCTCATTGTCTTTCCATCACT  529
             ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
Sbjct  1424  AGCTGAAGCATCTGGTATTGATGTTTGTCGTAAGTTTCCTCTCATTGTCTTTCCATCAAT  1483

Query  530   TGTGCA  535
             || |||
Sbjct  1484  TGCGCA  1489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26975736939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5