BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946787
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15390.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1384 0.0
> AT4G15390.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr4:8792812-8794293 REVERSE LENGTH=1482
Length=1482
Score = 1384 bits (749), Expect = 0.0
Identities = 1174/1374 (85%), Gaps = 50/1374 (4%)
Strand=Plus/Plus
Query 26 GACGATGAAGGTTGAAACCATCGGTAAAGAAATCATAAAGCCATCTTCCCCAACTCCAAA 85
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 24 GACGATGAAGGTTGAAACCATTAGTAAAGAAATCATAAAGCCATCTTCGCCAACTCCAAA 83
Query 86 TGATCTCCGAACTCTCCAACTCTCAATTTATGATCACATCCTTCCTCCGA-TTTACACAT 144
| |||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 84 TAATCTCCAAACTCTCCAACTCTCAATTTACGATCACATCCTTCCTCC-AGTTTACACAG 142
Query 145 TAGCCTTTCTCTTCTACACCAAAAATGATCTCATCTCTCAAGAACACACTTCCCACAAAC 204
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 143 TAGCCTTTCTCTTCTACACCAAAAATGATTTGATCTCTCAAGAACACACTTCCCACAAAC 202
Query 205 TCAAGACTTCTCTGTCCGAAACCTTGACCAAGTTCTACCCTCTTGCCGGAAGAATCAACG 264
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 203 TCAAGACTTCTCTGTCTGAAACCCTGACCAAGTTCTACCCTCTTGCCGGAAGAATCACCG 262
Query 265 GAGTAACCGTAGATTGTAACGATGAAGGAACTATCTTTGTCGATGCTCGTGTCAATAACT 324
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 263 GAGTAACCGTCGATTGTACCGATGAAGGAGCTATCTTTGTCGATGCTCGTGTCAATAACT 322
Query 325 GTTCTCTCTCTGATTTTTTCAAATGCCTTGATTTCGACTCCCTCCAACAGTTGCTTCCTC 384
|| ||||| |||| ||| |||| |||| |||||||||| |||||||||||||||||||||
Sbjct 323 GTCCTCTCACTGAATTTCTCAAGTGCCCTGATTTCGACGCCCTCCAACAGTTGCTTCCTC 382
Query 385 TAGACGTTGTGGACAACCCATACATGGCTGCTGCGACCTGGCCTTTGCTGCTTGTGAAGG 444
|||| ||||| |||||||||||| |||||||||| || |||||||||||||| |||||||
Sbjct 383 TAGATGTTGTAGACAACCCATACGTGGCTGCTGCCACGTGGCCTTTGCTGCTCGTGAAGG 442
Query 445 CAACTTACTTCCAATGTGGAGGCATGGCAATAGGAATCTGCATCTCTCATAAGATTGCCG 504
||||||||||| ||| ||||||||||| ||||||||||||||| |||| || || || |
Sbjct 443 CAACTTACTTCGGATGCGGAGGCATGGCCATAGGAATCTGCATCACTCACAAAATCGCGG 502
Query 505 ACGCAACCTCTATCTCTAGTTTCATTAAGAGCTGGGCTGGTATGGCTCGAGGAGAGGCCG 564
||||| |||| ||||| | ||||||| | |||||| | | ||||||||||||| ||
Sbjct 503 ACGCAGCCTCCATCTCGACTTTCATTCGGTCCTGGGCCGCCACGGCTCGAGGAGAGAACG 562
Query 565 AAGACG--GAG-TGGCGGGTACC-G-AGTTTGCCGCAGCAAACTTCTACCCACCAGCCAA 619
| | || | | ||| || || | | ||||| | || || |||||||||||||||||
Sbjct 563 ATGCCGCTGCGATGGAAAGT-CCTGTA-TTTGCTGGTGCGAATTTCTACCCACCAGCCAA 620
Query 620 CGAGGCCTTTAAGTTTCCGGTGGATGAACAAGCCAACAAGAGAAGCAGTATCACGAAGAG 679
||||| |||||| | || | ||| ||||||||| |||||||||||| || || |||||
Sbjct 621 TGAGGCTTTTAAGCTACCTGCGGACGAACAAGCCGGCAAGAGAAGCAGCATTACAAAGAG 680
Query 680 ATTTGTGTTCGATGCTTCTAAGTTAGAAGAGT-TGAGGACTAAAGTCGCTAGTGCAGAAG 738
|||||||||||| ||||||||| | ||||| | | ||||| |||| |||||||| ||||
Sbjct 681 ATTTGTGTTCGAAGCTTCTAAGGTGGAAGA-TCTCAGGACCAAAGCCGCTAGTGAAGAAA 739
Query 739 CCGTAGAC-AGACCTACACGGGTGGAGAGCGTCACTGCGCTTC-TCTGGAAAGGGTTCGT 796
| |||||| | |||||| |||||||||||||| |||||||| | |||||||| | |||||
Sbjct 740 CAGTAGACCA-ACCTACGCGGGTGGAGAGCGTTACTGCGCT-CATCTGGAAATGCTTCGT 797
Query 797 CTCTGCGGCATCCTCAACGACTACTACTTGTGATCTGAAAGTGTTGATCCAACCAGTTAA 856
| || |||||||| ||| ||||||||||||| |||||| || |||| | | |||
Sbjct 798 C---GC---ATCCTCAAAGACAACTACTTGTGATCACAAAGTGCTGGTCCAGCTTGCTAA 851
Query 857 CTTGCGCTCCAAGATACCCTCGCTTCTGTCACA-AAA-CT-TGATCGGAAATGTCATGCT 913
|||||| ||||||||||| || |||||| || | ||| || | ||||||||| ||||| |
Sbjct 852 CTTGCGGTCCAAGATACCTTCCCTTCTG-CA-AGAAAGCTCT-ATCGGAAATCTCATGTT 908
Query 914 CTCTTCTGTGGTTTTGAGTGTTGGTCAAGAAGGGGAAGTGAAAATTGAAGAGGCCGTTAG 973
|||||||||||| |||||| |||||| || ||||||||| ||||||||||||||||||||
Sbjct 909 CTCTTCTGTGGTCTTGAGTATTGGTCGAGGAGGGGAAGTTAAAATTGAAGAGGCCGTTAG 968
Query 974 AGACTTACAGAAAAAGAA-GAATGACTTACAAATTGTGATCCAAGACGAGGAG-GGGTCA 1031
|||||||| |||||| || | | || ||| || |||||||| |||||||| | ||||||
Sbjct 969 AGACTTAC-GAAAAAAAAAGGAGGAGTTAGGAACTGTGATCCTAGACGAGG-GTGGGTCA 1026
Query 1032 TCT---TCA------ATGATCGGTTCTAAACTTGCAAATCTGATGCTCACTAATTATT-T 1081
||| ||| ||||||||||| ||||| ||||||||||||||||| || |||| |
Sbjct 1027 TCTGACTCATCTTCCATGATCGGTTCGAAACTAGCAAATCTGATGCTCACCAACTATTCT 1086
Query 1082 -GAAGATGAGCTATGAGACTCATGAGCCCTACACCGTGAGTAGCTGGTGCAAGCTACCAC 1140
| | ||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |
Sbjct 1087 CG--GTTGAGCTATGAGACTCATGAACCCTATACCGTGAGTAGCTGGTGTAAGCTACCTC 1144
Query 1141 TTTACGAGGTTAGTTTTGGATGGGGAT-CTCCAGTTTGGGTTACCGGAAATGT-TGCTCC 1198
||||||||| ||| |||||||||| || |||| ||||||||| || ||||| | | ||
Sbjct 1145 TTTACGAGGCTAGCTTTGGATGGG-ATTCTCCGGTTTGGGTTGTTGGGAATGTGTCCCCC 1203
Query 1199 -TGCTTTTGGCAACTTAGCCATGTTGGTCGATTCCAAGGACAAAAAAGGAATTGAAGCGT 1257
|| || |||||||| ||||||||| | |||||||||||| | |||||||||||||||
Sbjct 1204 GTG-TTA-GGCAACTTGGCCATGTTGATAGATTCCAAGGACGGACAAGGAATTGAAGCGT 1261
Query 1258 TTGTCACACTGCCTGAAGAGAACATGTTGTCCTTTGAGCAGAACCCAGAATTGCTCGCCT 1317
| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||
Sbjct 1262 TCGTCACACTGCCTGAAGAGAACATGTCGTCCTTCGAGCAGAACCCAGAGTTGCTCGCCT 1321
Query 1318 TTGCTTCCCTGAATCCTAGTGTCTTGGTCTAAATCCTGCACTGAAATTTATTGT 1371
||||| || |||| |||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1322 TTGCTACCATGAACCCTAGTGTCTTGGTTTAAATCCTGTACTGAAATTTGTTGT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5