BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946791

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55950.1 | Symbols:  | Nucleotide/sugar transporter family p...  97.1    6e-20


> AT5G55950.1 | Symbols:  | Nucleotide/sugar transporter family 
protein | chr5:22658112-22660434 REVERSE LENGTH=1677
Length=1677

 Score = 97.1 bits (52),  Expect = 6e-20
 Identities = 69/77 (90%), Gaps = 2/77 (3%)
 Strand=Plus/Plus

Query  94   CTTTCTCCTCACTCTTCTCTCTTGGAGCTGTCATGGCCTTTGCTT-TGGGGCTTGCTAAT  152
            ||||||| || || ||||||||||||||||||||||||||||||| |||  || ||||||
Sbjct  543  CTTTCTCATCTCTTTTCTCTCTTGGAGCTGTCATGGCCTTTGCTTCTGGA-CTCGCTAAT  601

Query  153  ACAAGTCTCAAACACAA  169
            || ||||||||||||||
Sbjct  602  ACCAGTCTCAAACACAA  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5