BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946795
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15290.1 | Symbols: ATCSLB05, CSLB05, ATCSLB5 | Cellulose sy... 424 5e-118
AT4G15320.1 | Symbols: ATCSLB06, CSLB06, ATCSLB6 | cellulose sy... 390 5e-108
AT2G32530.1 | Symbols: ATCSLB03, CSLB03, ATCSLB3 | cellulose sy... 322 2e-87
AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose sy... 318 2e-86
AT2G32540.1 | Symbols: ATCSLB04, CSLB04, ATCSLB4 | cellulose sy... 283 8e-76
> AT4G15290.1 | Symbols: ATCSLB05, CSLB05, ATCSLB5 | Cellulose
synthase family protein | chr4:8721487-8726669 REVERSE LENGTH=2550
Length=2550
Score = 424 bits (229), Expect = 5e-118
Identities = 299/330 (91%), Gaps = 15/330 (5%)
Strand=Plus/Plus
Query 70 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATGTC-AATG 128
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 913 AGGGTTGATGACAAATGCACCATACACGTTGAACGTAGACTGTGACATGTATG-CTAATG 971
Query 129 AACCAGATGTAGTGCGGCAAGCAATGTGTGTATTTTT-----A--C--AGAACTCAAACC 179
|||||||||| ||||| |||||||||||||||||||| | | ||||||||||||
Sbjct 972 AACCAGATGTGGTGCGACAAGCAATGTGTGTATTTTTACAAAACTCGAAGAACTCAAACC 1031
Query 180 ATTGTGCTTTTGTTCAATTCCCTCAAAATTTCTATGATTCTTGCACCAACGAACTTGCCG 239
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1032 ATTGTGCTTTTGTTCAATTCCCTCAAAAGTTCTATGATTCTTACACCAACGAACTCGCCG 1091
Query 240 TCATACAATCGTATTT-GGGACGAGGAGTTGCGGGAATCCAAGGACCATTTTATATTGGA 298
|| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1092 TCTTACAATCG-ATTTTGGGACGAGGAGTTGCTGGAATCCAAGGACCATTTTATATTGGA 1150
Query 299 TCAGGATGTTTCCACACTAGAAGAGTTATGTACGGTTTATCTTCGGACGATATAGAAGAA 358
||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1151 ACAGGATGCTTCCACACTAGAAGAGTTATGTATGGTTTATCTTCGGACGATTTAGAAGAC 1210
Query 359 AACGGAAATCTTTCTTCG-GTTGCCACAAG 387
||||||||| ||||| | ||||| |||||
Sbjct 1211 AACGGAAATATTTCT-CAAGTTGCTACAAG 1239
> AT4G15320.1 | Symbols: ATCSLB06, CSLB06, ATCSLB6 | cellulose
synthase-like B6 | chr4:8742639-8747981 REVERSE LENGTH=2487
Length=2487
Score = 390 bits (211), Expect = 5e-108
Identities = 288/323 (89%), Gaps = 13/323 (4%)
Strand=Plus/Plus
Query 70 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATGTCAATGA 129
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1110 AGGATTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATGCCAATGA 1169
Query 130 ACCAGATGTAGTGCGGCAAGCAATGTGTGTATTTTT-----A--C--AGAACTCAAACCA 180
||||||||| ||||| |||||||||||||||||||| | | |||||||||||||
Sbjct 1170 ACCAGATGTGGTGCGACAAGCAATGTGTGTATTTTTACAAAACTCAAAGAACTCAAACCA 1229
Query 181 TTGTGCTTTTGTTCAATTCCCTCAAAATTTCTATGATTCTTGCACCAACGAACTTGCCGT 240
||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 1230 TTGTGCTTTTGTTCAGTTCCCTCAAAACTTCTATGATTCTTACACCAACGAACTTGTCGT 1289
Query 241 CATACAATC-GTATTTGGGACGAGGAGTTGCGGGAATCCAAGGACC-ATTTTATATTGGA 298
| ||||| | ||| || ||||||||||||||||||||||||||| | | |||||||||
Sbjct 1290 CTTACAA-CATTATATGAAACGAGGAGTTGCGGGAATCCAAGGACCGA-TATATATTGGA 1347
Query 299 TCAGGATGTTTCCACACTAGAAGAGTTATGTACGGTTTATCTTCGGACGATATAGAAGAA 358
||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1348 TCAGGCTGCTTCCACACTAGAAGAGTTATGTACGGTTTATCTTCAGACGATTTAGAAGAC 1407
Query 359 AACGGAAATCTTTCTTCGGTTGC 381
| |||| |||||||||||||||
Sbjct 1408 GATGGAAGTCTTTCTTCGGTTGC 1430
> AT2G32530.1 | Symbols: ATCSLB03, CSLB03, ATCSLB3 | cellulose
synthase-like B3 | chr2:13809216-13813570 FORWARD LENGTH=2418
Length=2418
Score = 322 bits (174), Expect = 2e-87
Identities = 287/339 (85%), Gaps = 17/339 (5%)
Strand=Plus/Plus
Query 70 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATGTC-AATG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 910 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATG-CTAATG 968
Query 129 AACCAGATGTAGTGCGGCAAGCAATGTGTGTATTT-T-----TA-C-A-GAACTCAAACC 179
|| ||||||| ||||| |||||||||||| ||||| | | | | ||| |||||||
Sbjct 969 AAGCAGATGTGGTGCGCCAAGCAATGTGTATATTTCTACAAAAATCAATGAATTCAAACC 1028
Query 180 ATTGTGCTTTTGTTCAATTCCCTCAAAATTTCTATGATTCTTGCACCAACGAACTTGCCG 239
|||||||||||||||||||||||||| | |||||||||||| | || ||||||| |||
Sbjct 1029 ATTGTGCTTTTGTTCAATTCCCTCAAGAGTTCTATGATTCTAACGCCGACGAACTCACCG 1088
Query 240 TCATACAATCGTATTTGGGACGAGGAGTTGCGGGAATCCAAGGACCATTTTATATT--GG 297
|| ||||||| ||||||||||||||| ||||||||||||||||||| | |||| ||
Sbjct 1089 TCTTACAATCATATTTGGGACGAGGAATTGCGGGAATCCAAGGACC-TAC-ATATGCAGG 1146
Query 298 ATCAGGATGTTTCCACACTAGAAGAGTTATGTACGGTTTATCT-TCGGACGATATAGAAG 356
|||||||| ||||||||||||||||||||||||||| |||| | | | ||| ||||||
Sbjct 1147 TTCAGGATGCTTCCACACTAGAAGAGTTATGTACGGTCTATCAATAG-ATGATTTAGAAG 1205
Query 357 AAAACGGAAATCTTTCTTCGGTTGCCACAAGTAAGTATT 395
| | |||| ||||||||| |||| ||||| |||||||
Sbjct 1206 ATGATGGAAGTCTTTCTTCACTTGCAACAAGGAAGTATT 1244
> AT2G32620.1 | Symbols: ATCSLB02, CSLB02, ATCSLB2 | cellulose
synthase-like B | chr2:13840744-13844324 FORWARD LENGTH=2274
Length=2274
Score = 318 bits (172), Expect = 2e-86
Identities = 280/330 (85%), Gaps = 15/330 (5%)
Strand=Plus/Plus
Query 70 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATGTC-AATG 128
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| | || |
Sbjct 843 AGGGTTGATGACAAATGCACCATACATGTTGAACGTGGACTGCGACATGTATG-CAAACG 901
Query 129 AACCAGATGTAGTGCGGCAAGCAATGTGTGTATTT-T-------T-ACAGAACTC-AAAC 178
|| ||||||| ||||| |||||||||||| ||||| | | ||| || || ||||
Sbjct 902 AAGCAGATGTGGTGCGACAAGCAATGTGTATATTTCTGCAAAAATCACA-AAATCAAAAC 960
Query 179 CATTGTGCTTTTGTTCAATTCCCTCAAAATTTCTATGATTCTTGCACCAACGAACTTGCC 238
||||||||||||||||||||||||||| | |||||||||||| ||||| | |||| ||
Sbjct 961 CATTGTGCTTTTGTTCAATTCCCTCAAGAGTTCTATGATTCTAACACCATCAAACTCACC 1020
Query 239 GTCATACAATCGTATTTGGGACGAGGAGTTGCGGGAATCCAAGGACCATTTTATATTGGA 298
|||||| |||| ||| ||||||||||| |||| ||||||||||||||| | || ||||
Sbjct 1021 GTCATAAAATCATATATGGGACGAGGAATTGCAGGAATCCAAGGACCAATAAATGTTGGT 1080
Query 299 TCAGGATGTTTCCACACTAGAAGAGTTATGTACGGTTTATCTTCGGACGATAT-AGAAGA 357
||||| || ||||||| |||||||||||||||||||||||| ||||||| || ||||||
Sbjct 1081 TCAGGTTGCTTCCACAGTAGAAGAGTTATGTACGGTTTATCGCCGGACGA-ATTAGAAGA 1139
Query 358 AAACGGAAATCTTTCTTCGGTTGCCACAAG 387
|| |||| ||||||||||||||| |||||
Sbjct 1140 CAATGGAAGTCTTTCTTCGGTTGCTACAAG 1169
> AT2G32540.1 | Symbols: ATCSLB04, CSLB04, ATCSLB4 | cellulose
synthase-like B4 | chr2:13814686-13818289 FORWARD LENGTH=2268
Length=2268
Score = 283 bits (153), Expect = 8e-76
Identities = 281/340 (83%), Gaps = 19/340 (6%)
Strand=Plus/Plus
Query 70 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGTGACATGTATGTCAATGA 129
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 843 AGGGTTGATGACAAATGCACCATACATGTTGAACGTAGACTGCGACATGTATGTCAATGA 902
Query 130 ACCAGATGTAGTGCGGCAAGCAATGTGTGTATTTTTACAGAA--C--T-----CAAACCA 180
| ||||||| ||||| |||||||||||| ||||| | || || | | |||||||
Sbjct 903 AGCAGATGTGGTGCGACAAGCAATGTGTATATTTCTGCAAAAATCAATGGATTCAAACCA 962
Query 181 TTGTGCTTTTGTTCAATTCCCTCAAAATTTCTATGATTCT--TGCACCAACGAACTTGCC 238
||||||||||||||||| ||||||| |||||||||||||| || | ||||| ||
Sbjct 963 TTGTGCTTTTGTTCAATACCCTCAAGATTTCTATGATTCTAATGT-CGGT-GAACTCACC 1020
Query 239 GTCATACAATCGTATTTGGGACGAGGAGTTGCGGGAATCCAAGGACCATTT-TATATTGG 297
||| |||||| || |||||||||||| ||||||||||||||||||| | ||| ||
Sbjct 1021 GTCTTACAATTATACTTGGGACGAGGAATTGCGGGAATCCAAGGACC-TCAGTATGCGGG 1079
Query 298 ATCAGGATGTTTCCACACTAGAAGAGTTATGTACGGT-TTATCT-TCGGACGATATAGAA 355
|||||||| ||||| ||||||||||||||||||||| || ||| | | ||||| ||| |
Sbjct 1080 TTCAGGATGCTTCCATACTAGAAGAGTTATGTACGGTCTT-TCTCTAG-ACGATTTAGGA 1137
Query 356 GAAAACGGAAATCTTTCTTCGGTTGCCACAAGTAAGTATT 395
|| | |||| ||||||||| |||| ||||| |||||||
Sbjct 1138 GACGATGGAAGTCTTTCTTCAATTGCTACAAGGAAGTATT 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19755225357
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5