BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946804

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34490.1 | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated...  54.7    6e-07


> AT4G34490.1 | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated 
protein 1 | chr4:16484530-16487417 REVERSE LENGTH=1859
Length=1859

 Score = 54.7 bits (29),  Expect = 6e-07
 Identities = 31/32 (97%), Gaps = 0/32 (0%)
 Strand=Plus/Plus

Query  108  AAGAAGCTGCTTGTTCGCATCAAGCAAACTCA  139
            ||| ||||||||||||||||||||||||||||
Sbjct  330  AAGGAGCTGCTTGTTCGCATCAAGCAAACTCA  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5