BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946807 Length=503 Score E Sequences producing significant alignments: (Bits) Value AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-1... 501 2e-141 > AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-18430319 REVERSE LENGTH=1414 Length=1414 Score = 501 bits (271), Expect = 2e-141 Identities = 337/368 (92%), Gaps = 7/368 (2%) Strand=Plus/Plus Query 51 CAAACTTACGACCGAACCAACATCGACTCATGGATCGGTAAGGGCAATC-CCCCTTGTCC 109 ||||||||||||||||||| ||||||||||||||||| || |||||| | || ||||||| Sbjct 139 CAAACTTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAA-CACCACTTGTCC 197 Query 110 ATTCACACGGGTCGCTCTCTCCGATC-TCACTCTCATCCCTAACCACACTCTCGGCCGTC 168 | ||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||| Sbjct 198 AGTCACACGTGTCGCTCTCTCCGA-CTTCACTCTCATCCCTAACCACACTCTCCGCCGTC 256 Query 169 TTATCCAAGAATGGTGTGTCGATAATCGCTCTAACGGTGTTGAACGGATTCCTACTCCGA 228 |||||||||||||||| |||| ||| ||||||||||| || |||||||||||||| || | Sbjct 257 TTATCCAAGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTA 316 Query 229 AACAACCGGCAGATCCAATCTCCGTTAGGTCTCTTCTCAGTCAAGCCTCCGCAATTTCCG 288 |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||| Sbjct 317 AACAACCGGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCG 376 Query 289 GAACTCACGCCTCTGTTCGCTCACGCGCCGCCGCCATTTGTCGTTTGAGAGAATTAGCTA 348 ||||||||| ||||||||| |||||||||||||| ||| |||||||||||| |||||||| Sbjct 377 GAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTA 436 Query 349 GAG--A-TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGA 405 ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 437 GAGATAGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGA 496 Query 406 GGATTTTG 413 |||||||| Sbjct 497 GGATTTTG 504 Score = 84.2 bits (45), Expect = 1e-15 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 409 TTTTGGTTTTATTGCATATGACGGAGACAGAGTGTGAAGCTCTTGCGTCGG 459 |||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 563 TTTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTGCGTCGG 613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24011922266 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5