BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946807

Length=503
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-1...   501    2e-141


> AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-18430319 
REVERSE LENGTH=1414
Length=1414

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 337/368 (92%), Gaps = 7/368 (2%)
 Strand=Plus/Plus

Query  51   CAAACTTACGACCGAACCAACATCGACTCATGGATCGGTAAGGGCAATC-CCCCTTGTCC  109
            ||||||||||||||||||| ||||||||||||||||| || |||||| | || |||||||
Sbjct  139  CAAACTTACGACCGAACCAGCATCGACTCATGGATCGCTATGGGCAA-CACCACTTGTCC  197

Query  110  ATTCACACGGGTCGCTCTCTCCGATC-TCACTCTCATCCCTAACCACACTCTCGGCCGTC  168
            | ||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct  198  AGTCACACGTGTCGCTCTCTCCGA-CTTCACTCTCATCCCTAACCACACTCTCCGCCGTC  256

Query  169  TTATCCAAGAATGGTGTGTCGATAATCGCTCTAACGGTGTTGAACGGATTCCTACTCCGA  228
            |||||||||||||||| |||| ||| ||||||||||| || |||||||||||||| || |
Sbjct  257  TTATCCAAGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTA  316

Query  229  AACAACCGGCAGATCCAATCTCCGTTAGGTCTCTTCTCAGTCAAGCCTCCGCAATTTCCG  288
            |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct  317  AACAACCGGCGGATCCAATCTCCGTTAGGTCACTTCTCAGTCAAGCATCCGCAATTACCG  376

Query  289  GAACTCACGCCTCTGTTCGCTCACGCGCCGCCGCCATTTGTCGTTTGAGAGAATTAGCTA  348
            ||||||||| ||||||||| |||||||||||||| ||| |||||||||||| ||||||||
Sbjct  377  GAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGAGAGGATTAGCTA  436

Query  349  GAG--A-TGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGA  405
            |||  | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  437  GAGATAGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGA  496

Query  406  GGATTTTG  413
            ||||||||
Sbjct  497  GGATTTTG  504


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 49/51 (96%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  409  TTTTGGTTTTATTGCATATGACGGAGACAGAGTGTGAAGCTCTTGCGTCGG  459
            |||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct  563  TTTTGGTTTTATTGCATATGACGGAGACGGAGTGTGAAGCTGTTGCGTCGG  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24011922266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5