BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946817

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nucle...   255    1e-67
  AT1G51405.1 | Symbols:  | myosin-related | chr1:19057780-190595...   246    8e-65
  AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B | ch...   233    7e-61


> AT3G23780.1 | Symbols: NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | nuclear 
RNA polymerase D2A | chr3:8567731-8574190 REVERSE LENGTH=3955
Length=3955

 Score =  255 bits (138),  Expect = 1e-67
 Identities = 151/157 (96%), Gaps = 1/157 (1%)
 Strand=Plus/Plus

Query  173   TCCCAGAAGCATTGCCAACAAGCCATTGGATTCTCATCAACGAATCCTAACATCCGCTGC  232
             ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  2351  TCCCAGAAGCACTGCCAACAAGCCATTGGATTCTCATCAACGAACCCTAACATCCGCTGC  2410

Query  233   GATACGCTGTCCCAGCAGCTGTTCTATCC-CAGAAGCCACTTTTCAAGACATTGGCGTCG  291
             ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  2411  GATACGCTGTCCCAGCAGCTGTTCTATCCTCAGAAGCCACTGTTCAAGACATTGGCGTCG  2470

Query  292   GAGTGTCTTAAAAAAGAAGTGATGTTTAATGGCCAGA  328
             ||||||||||||||||||||| |||| ||||||||||
Sbjct  2471  GAGTGTCTTAAAAAAGAAGTGCTGTTCAATGGCCAGA  2507


> AT1G51405.1 | Symbols:  | myosin-related | chr1:19057780-19059582 
FORWARD LENGTH=1464
Length=1464

 Score =  246 bits (133),  Expect = 8e-65
 Identities = 144/149 (97%), Gaps = 1/149 (1%)
 Strand=Plus/Plus

Query  24   TGGGAAAACAGAGAATCTCTGAAGGGAAGAAAGAGAGCAAGGTTTTGGAAGATGAGATAA  83
            |||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  504  TGGG-AAAGAGAGAATCTCTGAAGGGACGAAAGAGAGCAAGGTTTTGGAAGATGAGATAA  562

Query  84   GCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTA  143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  GCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTA  622

Query  144  GAAACTTCAGACATAATATTGATAAGCAA  172
            ||||||||| ||||||| |||||||||||
Sbjct  623  GAAACTTCAAACATAATTTTGATAAGCAA  651


> AT3G18090.1 | Symbols: NRPD2B | nuclear RNA polymerase D2B | 
chr3:6194564-6200237 FORWARD LENGTH=3715
Length=3715

 Score =  233 bits (126),  Expect = 7e-61
 Identities = 145/154 (94%), Gaps = 1/154 (1%)
 Strand=Plus/Plus

Query  176   CAGAAGCATTGCCAACAAGCCATTGGATTCTCATCAACGAATCCTAACATCCGCTGCGAT  235
             ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  2318  CAGAAGCATTGCCAACAAGCCATCGGATTCTCATCAACGAACCCTAACATCCGCTGCGAT  2377

Query  236   ACGCTGTCCCAGCAGCTGTTCTATCCC-AGAAGCCACTTTTCAAGACATTGGCGTCGGAG  294
             ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct  2378  ACGCTGTCCCAGCAGCTGTTCTATCCCCAAAAGCCACTTTTCAAGACATTGGCGTCAGAG  2437

Query  295   TGTCTTAAAAAAGAAGTGATGTTTAATGGCCAGA  328
             |||||| ||||||||||  | |||||||||||||
Sbjct  2438  TGTCTTGAAAAAGAAGTTCTATTTAATGGCCAGA  2471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5