BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946822
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15130.1 | Symbols: ATCCT2, CCT2 | phosphorylcholine cytidyl... 1417 0.0
> AT4G15130.1 | Symbols: ATCCT2, CCT2 | phosphorylcholine cytidylyltransferase2
| chr4:8637666-8639581 FORWARD LENGTH=1235
Length=1235
Score = 1417 bits (767), Expect = 0.0
Identities = 899/961 (94%), Gaps = 15/961 (2%)
Strand=Plus/Plus
Query 4 gaagaagaagaagaagaaATGAGCGTTAATGGTGAGAACAAGGTCTCAGGAGGAGAGAGC 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 110 GAAGAAGAAGAAGAAGAAATGAGCGTTAATGGTGAGAACAAGGTCTCAGGAGGAGATAGT 169
Query 64 TCATCTTCAGATCGACCTGTTAGAGTCTACGCCGATGGGATCTACGATTTGTTCCATTTC 123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 170 TCATCTTCAGATCGACCTGTTAGAGTCTACGCCGATGGGATCTTCGATTTGTTCCATTTC 229
Query 124 GGTCACGCTCGTGCCATCGAACAAGCCAAGAAATCGTTTCCGAATACGTATCTGCTTGTT 183
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 230 GGCCACGCTCGTGCCATCGAACAAGCCAAAAAATCGTTTCCGAATACGTATCTGCTTGTT 289
Query 184 GGATGCTGCAATGATGAAATTACGAACAAATTCAAGGGGAAGACTGTGATGACGGAATCT 243
||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 290 GGATGTTGCAATGACGAAATTACGAACAAATTCAAGGGGAAAACTGTGATGACTGAATCT 349
Query 244 GAACGATACGAATCTCTCCGACATTGCAAGTGGGTTGATGAAGTGATTCCAGATGCTCCA 303
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 GAGCGATACGAATCTCTTCGACATTGCAAGTGGGTTGATGAAGTGATTCCAGATGCACCA 409
Query 304 TGGGTTCTTACTACAGAGTTTCTTGATAAGCATAAGATAGATTACGTAGCTCACGATGCT 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGGGTTCTTACAACAGAGTTTCTTGATAAGCATAAGATAGATTACGTAGCTCACGATGCT 469
Query 364 CTTCCCTATGCGGATGCGACTGGAGCTGGAAACGATGTTTACGAGTTTGTAAAGTCGATT 423
||||||||||||||| | | |||||||||||| |||||||| ||||||||||||||||||
Sbjct 470 CTTCCCTATGCGGATACTAGTGGAGCTGGAAATGATGTTTATGAGTTTGTAAAGTCGATT 529
Query 424 GGGAAGTTTAAAGAAACTAAACGAACAGAGGGGATATCGACATCCGATATAATCATGAGA 483
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 530 GGGAAGTTTAAGGAGACTAAACGAACAGAGGGGATATCGACATCTGATATAATCATGAGA 589
Query 484 ATAGTGAAGGATTATAACCAGTATGTGTTGCGTAATCTGGATCGAGGATATTCAAGAGAA 543
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 590 ATAGTGAAAGATTATAACCAGTATGTGTTGCGTAATCTGGACCGAGGTTATTCAAGAGAA 649
Query 544 GAACTCGGTGTTAGTTTCGTTAAGGAGAAGAGGCTTAGAGTGAACATGAGATTGAAGAAA 603
||||||||||| || |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 650 GAACTCGGTGTCAGCTTCG---AGGAGAAGAGGCTTAGAGTGAATATGAGATTGAAGAAA 706
Query 604 CTACAAGAGAAAGTGAAAGAACAACAAGAAAAGATACAAACCGTAGCAAAAACTGCTGGG 663
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CTACAAGAGAAAGTTAAAGAACAACAAGAAAAGATACAAACCGTAGCAAAAACTGCTGGG 766
Query 664 ATGCACCATGATGAGTGGCTTGAAAACGCTGATCGTTGGGTTGCTGGATTTCTTGAAATG 723
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 767 ATGCACCATGATGAGTGGCTTGAAAATGCTGATCGTTGGGTGGCTGGATTTCTTGAAATG 826
Query 724 TTTGAGGAAGGTTGTCATAAAATGGGAACAGCCATCAGAGATGGGATCCAGCAACGGCTA 783
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 827 TTTGAGGAAGGTTGTCATAAAATGGGAACAGCCATCAGAGATGGGATTCAGCAACGGCTA 886
Query 784 ATGAGGCAAGAATCAGAAGAGAACCGACGCTTGCTTCAAAATGGACTAACAATTTCCGAA 843
|||||||||||||| ||||||||||| || ||||||||||||||||| || |||||| ||
Sbjct 887 ATGAGGCAAGAATCGGAAGAGAACCGGCGATTGCTTCAAAATGGACTGACGATTTCC-AA 945
Query 844 A-ACAATGACGATGAACAAATGTCAGAAGGAGAG-GAGAC-GCAACATGACCATGAAGAT 900
| |||||||||||||||||||||| || | | | ||| ||| || | |||||
Sbjct 946 AGACAATGACGATGAACAAATGTCTGATG-ACAACGAGTTTGCA----GA--A-GAAGAC 997
Query 901 TGCTTAAATGTGAGCAACAAAGGGATTGAATCAGTAAAGAAATGAGAGATTTTGGCTCAT 960
||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 998 TGCGTCAATGTGAGCAACAAAGGGATTGAAACAGTAAAGAAATGAGAGATTTTGGGTCAT 1057
Query 961 G 961
|
Sbjct 1058 G 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5