BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946829

Length=383
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16310.1 | Symbols:  | Cation efflux family protein | chr1:5...   207    5e-53


> AT1G16310.1 | Symbols:  | Cation efflux family protein | chr1:5578431-5580693 
FORWARD LENGTH=1399
Length=1399

 Score =  207 bits (112),  Expect = 5e-53
 Identities = 142/157 (90%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  12   GCAACATATATGGTGCTTTTTATGGCAAACGTTTATGACTCTATGGAGAGTAGATCCATG  71
            |||||| || ||||||||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct  446  GCAACAAATTTGGTGCTTTTTGTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATG  505

Query  72   GCTGTGATTGCTTCAAATTTGGACTCTCTCGTGGATCTCTTGTCTGGTTTTATTGTCTGG  131
            |||||||||||||||| ||||||||||||  ||||||||||||||||||||||  |||||
Sbjct  506  GCTGTGATTGCTTCAACTTTGGACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGG  565

Query  132  TTTACATCTAATGAAATGAGAAAACCAAACCGGTTTC  168
            |||||| ||||||  |||||||||||||||| |||||
Sbjct  566  TTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTC  602



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18046121891


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5