BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946833
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15053.1 | Symbols: | Protein of Unknown Function (DUF239) ... 281 6e-75
AT4G15050.1 | Symbols: | Protein of Unknown Function (DUF239) ... 143 3e-33
AT1G10190.1 | Symbols: | Protein of Unknown Function (DUF239) ... 132 6e-30
> AT4G15053.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:8591930-8593834 REVERSE LENGTH=1246
Length=1246
Score = 281 bits (152), Expect = 6e-75
Identities = 234/273 (86%), Gaps = 7/273 (3%)
Strand=Plus/Plus
Query 580 AGCCAGTAGAA-ATTGGACTTTGGCCGGAACGTAGGTTTCAACAAAGCTTTGGAGATTTT 638
|||||||| || |||||| ||||||||| | ||||||||||||||||| |||| ||| |
Sbjct 927 AGCCAGTA-AATATTGGATTTTGGCCGGGGCATAGGTTTCAACAAAGCTATGGAAATTAT 985
Query 639 GTCGAGTGGGGTGGAGAAGTATACACCGCATCACTGCCGAGTCCTCAAATGGGATATGGA 698
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 986 GTCGAGTGGGGTGGAGAAGTGTACAGGGCATCACTGCCGAGTCCTCAAATGGGATATGGA 1045
Query 699 TATTTCCCAATTCAAAATATCAGGTATGATGCATATATCGAACAGATAGCCATATTCGAC 758
||||| |||||||| ||| | ||||||||||||||| |||| ||| ||||| ||||
Sbjct 1046 TATTTTCCAATTCAGGATAAAAATTATGATGCATATATCCAACACATATCCATACGCGAC 1105
Query 759 -GATAATTATAACATAGACCGCAATTTGGACTATCTTGAAGTCTTTTCTGAC-AGCAATC 816
| || ||||||||||||||||||| |||||||||| |||| || ||| ||| | ||||
Sbjct 1106 CGTTA-TTATAACATAGACCGCAATGTGGACTATCTCGAAGACTATTCAGACGAT-AATC 1163
Query 817 G-GGATATCGAGTGATAGACACGCGAGATCCTA 848
| || |||| |||||||||||| ||||||||||
Sbjct 1164 GAGGCTATCAAGTGATAGACACCCGAGATCCTA 1196
> AT4G15050.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:8588548-8590345 REVERSE LENGTH=1191
Length=1191
Score = 143 bits (77), Expect = 3e-33
Identities = 161/200 (81%), Gaps = 12/200 (6%)
Strand=Plus/Plus
Query 588 GAAATTGGACTTTGGCCG--GAACGTAGGTTTCAACAAAGCTTTGGAGATTTTGTCGAGT 645
||||||||| |||||||| | | |||||||||| ||||||| |||| |||| || ||||
Sbjct 874 GAAATTGGATTTTGGCCGTCG-A-GTAGGTTTCATCAAAGCTCTGGAAATTTGGTGGAGT 931
Query 646 GGGGTGGAGAAGTATACACCGCATCACTGCCGAGTCCTCAAATGGGATATGGATATTTCC 705
||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 932 GGGGTGGAGAAGTGTACAGCGCATCACTGCCGAGTCCTCAAATGGGATTTGGGTATTTTG 991
Query 706 CA-AT--TCAAAATATCAGGTATGATGCATATATCGAACAGATAGCCATATTCGACGATA 762
|| ||||| | | | || |||||||||||| ||| |||| | || |||||| |
Sbjct 992 TTGATGGTCAAA-TG-C-GCTACGATGCATATATCAAACGGATATCTGTAATCGACGGTT 1048
Query 763 ATTA-TAACATAGACCGCAA 781
||| ||| || ||||||||
Sbjct 1049 -TTAATAAGATTGACCGCAA 1067
> AT1G10190.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:3343686-3345632 REVERSE LENGTH=1311
Length=1311
Score = 132 bits (71), Expect = 6e-30
Identities = 158/199 (79%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 588 GAAATTGGACTTTGGCCG--GAACGTAGGTTTCAACAAAGCTTTGGAGATTTTGTCGAGT 645
||| ||||| |||||||| | | |||| ||||| ||||||| |||| |||| || ||||
Sbjct 915 GAAGTTGGATTTTGGCCGTCG-A-GTAGATTTCATCAAAGCTCTGGAAATTTGGTGGAGT 972
Query 646 GGGGTGGAGAAGTATACACCGCATCACTGCCGAGTCCTCAAATGGGATATGGATATTTCC 705
|||||||||||| || | ||||||| |||||||||||||||||||||||||||||| |
Sbjct 973 GGGGTGGAGAAGCGTATAGTGCATCACAGCCGAGTCCTCAAATGGGATATGGATATTTTC 1032
Query 706 CA-ATTCAAAATAT-CAGGTATGATGCATATATCGAACAGATAGCCATATTCGACGATAA 763
|| | | ||| | | || |||||||||||| ||| |||| | || |||||| |
Sbjct 1033 TTGATGCTAG-TATGC-GCTACGATGCATATATCAAACGGATATCTGTAATCGACGGTT- 1089
Query 764 TTA-TAACATAGACCGCAA 781
||| |||||| ||||||||
Sbjct 1090 TTAATAACATTGACCGCAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5