BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946844
Length=2412
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14990.1 | Symbols: | Topoisomerase II-associated protein P... 3522 0.0
AT3G22270.1 | Symbols: | Topoisomerase II-associated protein P... 1875 0.0
> AT4G14990.1 | Symbols: | Topoisomerase II-associated protein
PAT1 | chr4:8565622-8569814 REVERSE LENGTH=3304
Length=3304
Score = 3522 bits (1907), Expect = 0.0
Identities = 2255/2418 (93%), Gaps = 43/2418 (2%)
Strand=Plus/Plus
Query 15 TTGTG-TTGATCATGGAGAGATCTGATTCTAGAGATTTCTATACCTTTGCTCGGACTTCT 73
||||| ||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct 292 TTGTGTTTGATCATGGAGAGATCTGATTCTAGAGATTTCTACAACTTCGCTAAGACTTCT 351
Query 74 TCAGATAAGAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCAAAGTCTT 133
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCTGATAACAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCAAAGTCTT 411
Query 134 GAAGAAGTGGAATTGGGTGGTCTTGATGATGATGTTACTGTTCGTGGACATGTCGATGAT 193
|||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 412 GAAGAAGTCGAATTGGGTGGTCTTGATGATGATGGTACTGTTCGTGGACATGTTGATGAT 471
Query 194 GAAGAGTATCATTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCACTATCTGAGATG 253
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 472 GAAGAGTATCACTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCATTATCTGACATG 531
Query 254 GATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACTGGGCCCAAACACCTT 313
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 GATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACCGGGCCCAAACACCTT 591
Query 314 GGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCTACTGCTACTGAT 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 GGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCTACTGCTACAGAT 651
Query 374 TGGACACAAGATAATGAGTTCACAAGCTGGTTGGAACAGCACAC-GCTTGAAGAACAAGT 432
||||| || |||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 652 TGGACTCAGGATAATGAGTTCACAAGCTGGTTGGATCAGCACACAG-TTGAAGAACAAGT 710
Query 433 TCAGGAAGCTAGTTGGTCTTCACAGCCACAGTCGTCTGCTAATTC--A-TCTTTATACAG 489
|||||||||||||||||||||||||||||| || ||| ||||||| | ||| | || ||
Sbjct 711 TCAGGAAGCTAGTTGGTCTTCACAGCCACAATCATCTCCTAATTCAAATTCTCTGTATAG 770
Query 490 GACATCTTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAGTGAACCGATTAT 549
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 771 GACATCCTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAGCGAACCGATTAT 830
Query 550 TGTACCAGAATCGACTTTTACGTCTTTTCCTTCGCCTGGAAAAAGATCTCAACAGTCTTC 609
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 831 CGTACCAGAATCGACGTTTACATCTTTTCCTTCGCCTGGAAAAAGATCTCAACAGTCTTC 890
Query 610 ACCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGTCAAACTTTTCAGC 669
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 891 CCCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGTCGAACTTTTCAGC 950
Query 670 ACCAAATGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCAGGATTGTCACATGGACC 729
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 TCCAAACGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCGGGATTGTCACATGGACC 1010
Query 730 ACCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTACTCTTGGTAACAT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GTCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTACTCTTGGTAACAT 1070
Query 790 GGTGCAGCAACCTCCTCATTGGGTTACCGACCCCGGTCTTCTGCACGGTGATCATTCCGG 849
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1071 GGTGCAACAACCTCCTCATTGGGTTACCGACCCCGGCCTTCTCCACGGTGATCATTCCGC 1130
Query 850 GTTGTTACACAGTCTAATGCAACAGCAGCATCTGCAACAATTACCTCCTCGGAATGGTTT 909
||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct 1131 GTTGTTACACAGTCTAATGCAACAGCAACATCTCCAACAACTGCCTCCTCGGAATGGTTT 1190
Query 910 TACTTCACAACAGTTGATTTCCCTTCAGCAGAGACAATCTTTAGCTCATCTTGCTGCATT 969
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TACTTCACAACAGTTGATATCTCTTCAGCAGAGACAATCTTTAGCTCATCTTGCTGCATT 1250
Query 970 GCAAACTCAGCTGTATAGTTCTTATCCTTCTCCATCACAAAAAGTTCCTTTT-GGGGCTG 1028
||| ||||||| |||||||||||||||||||||||||| |||| | ||||| |||| ||
Sbjct 1251 ACAATCTCAGCTATATAGTTCTTATCCTTCTCCATCACATAAAGCT-CTTTTCGGGGTTG 1309
Query 1029 GTGAAGTAAGAGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAACAGA---GGTA 1085
|||||||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 1310 GTGAAGTAAGGGAACACAAACATAAGTCGTCTCATCGAAGTCGAAAGAACAGAGGTGGTA 1369
Query 1086 TCTCTCAACAGACCTCAGATTTGGCTAGCCAGAAAAGCGAAAGCGGACTGCAATTTAAAT 1145
||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||| ||
Sbjct 1370 TCTCTCAACAGACATCAGATTTAGCTAGCCAGAAAAGCGAAAGCGGATTGCAGTTTAGAT 1429
Query 1146 CAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATGCAGCATTCCAGTTCAC 1205
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1430 CAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATGCAGCATTCTAATTCAC 1489
Query 1206 ACAGTAGTGACCCTTATGTCAATGATTATTACCACCAAGCTCGGCTTGCGAAAAAGTCAT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 ACAGTAGTGACCCTTATGTCAATGATTATTACCACCAAGCTCGGCTTGCGAAAAAGTCAT 1549
Query 1266 CCGGATCAAGAGTGAAGCCTCAGTTGTATCCTTCTCATTTGAAGGACCACCAATCTCGGT 1325
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1550 CCGGATCAAGAACAAAGCCTCAGTTGTATCCTTCTCATTTGAAGGATCACCAATCTCGGT 1609
Query 1326 CCCGTAATAGTTCTGATCAACAACCACAAGTTCATGTGGATGCTCTTGGAAAGATTACGC 1385
| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1610 CGCGGAATAGTTCTGATCAGCAACCACAAGTTCATGTTGATGCTCTTGGAAAGATTACAC 1669
Query 1386 TTCCTTCTATTTGCAGACCACGAGCGCTACTCGAGGTTGACTCTCCTCCTAGCTCTGGTG 1445
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1670 TTCCTTCTATTTGCAGACCACGAGCTCTACTCGAGGTTGACTCTCCTCCTAGCTCTGGT- 1728
Query 1446 ATGGAAGGTCTGGTCATAAGCATCTTGAAGATGAGCCTCTTGTCGCAGCTAGAGTCACAA 1505
| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1729 ---------C-----ATAAGCATCTTGAAGATGAGCCTCTTGTTGCAGCTAGAGTCACAA 1774
Query 1506 TTGAAGATGCTTTTGGAGTTCTTATCGATATAGTTGACATTGACAGGACTCTCCAATTCA 1565
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1775 TTGAAGATGCTTTCGGAGTTCTTATCGATATAGTTGACATTGATAGGACTCTTCAATTCA 1834
Query 1566 ACAGGCCACAAGACGGTGGTGCACAGCTCAGGAGAAAACGGCAGATACTTCTAGAAGGAT 1625
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1835 ACCGGCCACAAGACGGTGGTGCACAGCTCAGGAGAAAACGGCAGATCCTTCTTGAAGGAT 1894
Query 1626 TAGCAACATCACTTCAACTTGTTGATCCTTTTAGCAAAACCGGCCAGAAAACCGCATTGA 1685
||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1895 TAGCAACTTCACTTCAACTTGTTGATCCTTTTAGCAAAACTGGTCAGAAAACCGGATTGA 1954
Query 1686 CCGCCAAGGATGATATCGTGTTTCTACGCATAGCTACTCTTCCTAAGGGTAGAAAATTGC 1745
|| | |||||||||||||||||||| |||||| | ||||||||||||||| | |||||||
Sbjct 1955 CCACAAAGGATGATATCGTGTTTCTCCGCATAACGACTCTTCCTAAGGGTCGGAAATTGC 2014
Query 1746 TGACAAAGTATCTACAGCTTCTTGTTCCGGGTACTGAGATCGCTCGGGTTGTCTGTATGG 1805
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2015 TGACAAAGTATCTACAGCTTCTTGTTCCGGGTACTGAGATCGCGCGGGTTGTCTGTATGG 2074
Query 1806 CTGTATTCCGCCACCTCAGGTTTCTATTCGGTGGCCTACCGTCAGATAGCATTGCAGCAG 1865
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2075 CTGTATTCCGCCACCTGAGGTTTCTATTCGGTGGCCTACCGTCAGATAGCCTTGCAGCAG 2134
Query 1866 AGACAATAGCTAATCTTGCTAAAGCAGTTACGGTTTGTGTTCACGCAATGGACCTCCGAG 1925
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2135 AGACGATAGCTAATCTTGCTAAAGCAGTTACGGTTTGTGTTCAAGCAATGGACCTCCGAG 2194
Query 1926 CATTGAGTGCTTGTCTTGCAGCTGTTGTTTGTTCTTCAGAACAGCCACCTCTCCGTCCAA 1985
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2195 CATTGAGTGCTTGTCTTGCAGCTGTTGTTTGCTCGTCAGAACAGCCACCTCTCCGTCCAA 2254
Query 1986 TAGGAAGTCCTTCCGGGGATGGAGCTTCAGTTGTCTTGGTATCTCTTCTTGAGAGAGCTG 2045
|||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 2255 TAGGAAGTTCTTCCGGGGACGGAGCATCGGTTGTCTTGGTATCTCTTCTTGAGAGAGCTG 2314
Query 2046 CTGAAGTAGTAGTAGTGGTGGTGGTTCCACCGCGTGTCAGCAAC--------TC-GAATG 2096
|||||||| | |||||| ||||||||||||||||||||||||| || |||||
Sbjct 2315 CTGAAGTA--A-TAGTGGCGGTGGTTCCACCGCGTGTCAGCAACCACGGGAATCCGAATG 2371
Query 2097 ATGGACTCTGGAGAGCATCGTTTGATGAATTCTTCTCTCTTCTTACTAAATATTGCAGGA 2156
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2372 ATGGACTCTGGAGAGCCTCGTTTGATGAGTTCTTCTCTCTTCTTACTAAATATTGCAGGA 2431
Query 2157 GCAAGTATGAGACAATCCATGGTCAGAACCAGGATAATGCAGCTGATGTGTTGGAGCTAG 2216
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 2432 GCAAGTACGAGACAATCCATGGTCAGAACCACGACAATGCAGCTGATGTGTTGGAGTTAG 2491
Query 2217 CTATAAAGAGAGAAATGCCTGCCGAGCTTTTACGTGCGAGTCTTCGTCATACCAATGAAA 2276
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2492 CTATAAAGAGGGAAATGCCTGCCGAGCTTTTACGTGCGAGTCTTCGTCATACTAATGAAG 2551
Query 2277 ACCAGCGGAATTTCTTACTTAACGTTGGTCGTAGTGCATCGCCAGTTAGCGAATCAACAA 2336
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2552 ACCAGCGGAACTTCTTACTTAACGTTGGTCGTAGTGCATCGCCAGTTAGCGAGTCGACAA 2611
Query 2337 CTACAACGACGC--GTGCAAGTGGTGGTCAGGTCAATTCTGAATTTGTGAGGGGTTAAAG 2394
| || || || ||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 2612 CAACC-CGT-GCAAGTGCAAGTGGTGGTCAGATTAACTCTGAATTTGTGAGGGGTTAA-G 2668
Query 2395 TTTAACCATATAGGAAAC 2412
||||||||||||||||||
Sbjct 2669 TTTAACCATATAGGAAAC 2686
> AT3G22270.1 | Symbols: | Topoisomerase II-associated protein
PAT1 | chr3:7874145-7878468 FORWARD LENGTH=3295
Length=3295
Score = 1875 bits (1015), Expect = 0.0
Identities = 1979/2428 (82%), Gaps = 132/2428 (5%)
Strand=Plus/Plus
Query 22 GATCATGGAGAGATCTGATTCTAGAGATTTCTATACCTTTGCTCG-GACTTCTT-C--AG 77
||||||||||||||||||||| || ||||| |||| ||||| ||| | |||||| | ||
Sbjct 332 GATCATGGAGAGATCTGATTCAAGGGATTTGTATAACTTTGTTCGCG-CTTCTTCCTTAG 390
Query 78 ATAAGAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCAAAGTCTTGAAG 137
|||| || ||| |||||||||| ||||| ||||||||||| ||||| |||| ||| || |
Sbjct 391 ATAAAAACAGTACACTCTTTGATGCATCACAATATGAGTTTTTTGGACAAAATCTGGATG 450
Query 138 A-AGTGGAA-TTGGGTGGTCTTGATGATGAT---G---T---TACTGTTCGTGGACATGT 186
| | ||||| ||||| ||||||||||||||| | | | |||||| ||||||||
Sbjct 451 ATA-TGGAACTTGGG-GGTCTTGATGATGATGGAGTAATCGCTCCTGTTCTTGGACATG- 507
Query 187 C-GATGATGAAGAGTATCATTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCACTAT 245
| |||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 508 CTGATGATGATGAGTATCACTTGTTTGATAAAGGAGAGGGTGCAGGTTTAGGATCACTAT 567
Query 246 CTGAGATGGATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACTGGGCCCA 305
|||| |||||||||||||| |||||||| |||||| | |||||| |||||| || ||||
Sbjct 568 CTGACATGGATGATCTTGCGACAACTTTCGCAAAGTTAAACAGAGTTGTTACCGGACCCA 627
Query 306 AACACCTTGGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCTACTG 365
|||||| |||||| |||||||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 628 AACACCCTGGAGTTATTGGTGATAGAGGATCAGGATCCTTTTCAAGAGAGAGTTCTTCTG 687
Query 366 CTACTGATTGGACACAAGAT-AATGAGTTCACAAGCTGGTTGGAACAGCACACGCTTGAA 424
|||| ||||||||||||||| | ||| ||||||||||||||| || | | | | ||
Sbjct 688 CTACCGATTGGACACAAGATGCA-GAGCTCACAAGCTGGTTGG-AC-G-A-A--C---AA 737
Query 425 GAACAAGTTCAG-GAAGCTAGTTGGTCTTCACAGCCACAGTCGTCTGCTAATTC---ATC 480
|| |||| || ||| || ||||| ||||||||||| || | |||| |||| | |
Sbjct 738 GATCAAG--AAGCTAAG--AGATGGTCCTCACAGCCACAATCATTTGCTCATTCAAAACC 793
Query 481 TTTATACAGGACATCTTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAGTGA 540
||| ||||||||||| || ||||||||||||||| | ||||| || || |||| ||||||
Sbjct 794 TTTGTACAGGACATCCTCTTATCCTCAGCAGCAACCGCAGCTGCAGCACTACAATAGTGA 853
Query 541 ACCGATTATTGTACCAGAATCGACTTTTACGTCTTTTCCTTCGCCTGGAAAAAGATCTCA 600
|||||| ||| |||||||||| | |||||| || ||||| ||||||| || |||||||
Sbjct 854 ACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCCGCCTGGTAACAGATCTCC 913
Query 601 ACAGTCTTCA-CCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGTCAA 659
||| ||||| ||| | || | ||||| ||||||||||||||||||||| ||||| |
Sbjct 914 GCAGGCTTCACCCG-GAAATCTCCATCGCGCTCCTTCTCTTCCTGGTGGTTCTCAGTTGA 972
Query 660 ACTTTTCAGCACCAAATGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCAGGATTGT 719
|| ||| ||||| | || ||| |||| |||||| ||| ||||| ||||||||||
Sbjct 973 CCTATTCTGCACC---T---TCCCCGCTGTCAAATTCTGGTTTTCATCTTTCAGGATTGT 1026
Query 720 CACATGGACCACCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTACTC 779
| || || | || || |||||| ||||||| ||||||||||||| || |||||||| |
Sbjct 1027 CGCAAGG-GC-CC-CACTATGGTGGTAATTTGACTAGATATGCCTCGTGCGGTCCTACGC 1083
Query 780 TTGGTAACATGGTGCAGCAACCTCCTCATTGGGTTACCGACCCCGGTCTTCTGCACGGTG 839
||||||||||||| |||| ||||||||||| || || || |||| ||| ||||| |
Sbjct 1084 TTGGTAACATGGT---GCAA---CCTCATTGGGTCACTGATCCTGGTCATCTACACGGAG 1137
Query 840 ATCATTCCGGGTTGTTACACAGTCTAATGCAACAGCAGCATCTGCAACAATTACCTCCTC 899
||||||| || || ||||| | ||| ||||||| ||||| | |||||||| |||||||
Sbjct 1138 ATCATTCTGGTTTATTACATAATCTGGTGCAACAACAGCA--T-CAACAATTGCCTCCTC 1194
Query 900 GGAATGGTTTTACT-TCACAACAGTTGATTTCCCTTCAGCAGAGACAATCTTTA-GCTCA 957
| |||| | ||| | || ||||| ||| || |||| |||||||||||||| || |||||
Sbjct 1195 GAAATGCTATTA-TGTCGCAACATTTGCTTGCCCTCCAGCAGAGACAATC-ATATGCTCA 1252
Query 958 TCTTGCTGCATTGCAAACTCAGCTGTATAGTTCTTATCCTTCTCCATCACAAAAAGTTCC 1017
||||| || | || |||| ||||||||||| |||||||| ||||||| ||||| ||
Sbjct 1253 ACTTGCAGCGCTACAGTCTCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAGTCCC 1312
Query 1018 TTTTGGGGCTGGTGAAGTAAGAGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAA 1077
|||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TTTTGGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAA 1372
Query 1078 CAGAGGTA-TCTCTCAACAGACCTCAGATTTGGCTAGCCAGAAAAGCGAAAGC-GGACTG 1135
||||| | ||||||||||||| ||||| ||||| |||||||| |||| | ||||||
Sbjct 1373 TAGAGG-ACTCTCTCAACAGACATCAGACGCAGCTAGTCAGAAAAGTGAAA-CTGGACTG 1430
Query 1136 CAATTTAAATCAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATGCAGCAT 1195
|| |||| ||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1431 CAGTTTAGATCAAAGCACATGACTTCAGAAGAAATAGAGAGTATACTCAAGATGCAGCAT 1490
Query 1196 TCCAGTTCACACAGTAGTGA-CCCTTATGTCAATGATTATTACCACCAAGCTCGGCTTGC 1254
|||| ||||||||| | ||| |||| ||||||||||||||||||||||||| ||||||
Sbjct 1491 TCCAATTCACACAGCAATGATCCCT-ATGTCAATGATTATTACCACCAAGCGAAGCTTGC 1549
Query 1255 GAAAAAGTCAT-CCGGATC-AAGAGTGAAGC-CTCAGTTGTATCCTTCTCATTTGAAGGA 1311
|| ||||| | ||||||| || || || | |||| || |||||| |||| ||||||||
Sbjct 1550 CAAGAAGTC-TGCCGGATCTAA-AGC-AATCTCTCACTTCTATCCTGCTCAGTTGAAGGA 1606
Query 1312 CCACCAATCTCGGTCCCGTAATAGTTCTGATCAACAACCACAAGTTCATGTGGATGCTCT 1371
|||||| |||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct 1607 CCACCAGCCTCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGATGCTCT 1666
Query 1372 TGG-AAAGATTACGCTTCCTTCTATTTGCAGACCACGA-GCGCTA-CTCGAGGTTGACTC 1428
||| ||| ||||| ||||| ||| | |||| |||| | || || || |||||||||||
Sbjct 1667 TGGTAAA-ATTACACTTCCATCTGTCCGCAGGCCAC-ATGC-CTTGCTTGAGGTTGACTC 1723
Query 1429 TCCTCCTAGCTCTGGTGATGGAAG-G----TC-T--GG--TCAT-AAG-CATCTTG-AAG 1475
| ||||| | | | |||||||| | || | || ||| || ||| ||| ||
Sbjct 1724 TTCTCCTGGTTTTAACGATGGAAGCGGGGATCATAAGGGCTCAGGAAAACAT-TTGGAAC 1782
Query 1476 ATGAGCCTCTTGTCGCAGCTAGAGTCACAATTGAAGATGCTTTTGGAGTTCTTATCGATA 1535
| || ||||| || |||||||| || ||||||||||||||| ||||||||||||| || |
Sbjct 1783 AGGAACCTCTCGTTGCAGCTAGGGTTACAATTGAAGATGCTCTTGGAGTTCTTATTGACA 1842
Query 1536 TAGTTGACATTGACAGGACTCTCCAATTCAACAGG-CCACAAGACGGTGGTGCACAGCTC 1594
|||||||||||||||||||||||||| || || | || || ||||| ||||| || |||
Sbjct 1843 TAGTTGACATTGACAGGACTCTCCAAAACA-CAAGACCCCAGGACGGAGGTGCCCAACTC 1901
Query 1595 AGGAGAAAACGGCAGATACTTCTAGAAGGATTAGCAACATCACTTCAACTTGTTGATCCT 1654
| |||||| |||||||| || |||||||||||||| ||| |||||||||||| ||||||
Sbjct 1902 AAGAGAAAGCGGCAGATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGCTGATCCG 1961
Query 1655 TTTAGCAAAACCGGCCAGAAAACCGC-ATTGACCGCCAAGGATGATATCGTGTTTCTACG 1713
|| ||||||||||| |||||| | | || ||| || ||||||||||| || ||||||||
Sbjct 1962 TTCAGCAAAACCGGTCAGAAATCTGGGAT-GACTGCTAAGGATGATATTGTCTTTCTACG 2020
Query 1714 CATAGCTACTCTTCCTAAGGGTAGAAAATTGCTGACAAAGTATCTACAGCTTCTTGTTCC 1773
||||| ||||| || |||||| | |||||||| |||||||||||||| ||||| |||||
Sbjct 2021 TATAGCGACTCTCCCCAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTCTAGTTCC 2080
Query 1774 GGGTACTGAGA-TCGCTCGGGTTGTCTGTATGGCTGTATTCCGCCACCTCAGGTTTCTAT 1832
|||||||||| | ||||| ||||||||||||||| ||||||||||| | || ||||| |
Sbjct 2081 AGGTACTGAGAAT-GCTCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGATTTCTGT 2139
Query 1833 TCGGTGGCCTACCGTCAGATAGCAT-T-GCAGCAGAGACAATAGCTAATCTTGCTAAAGC 1890
|||| |||||||| ||||||| | | | ||||||||||||||| |||||||||| |||||
Sbjct 2140 TCGGCGGCCTACCTTCAGATA-C-TCTAGCAGCAGAGACAATATCTAATCTTGCCAAAGC 2197
Query 1891 AGTTACGGTTTGTGTTCACGCAATGGACCTCCGAGCATTGAGTGCTTGTCTTGCAGCTGT 1950
||| |||||||| ||||| || |||||||| |||||| |||||||||| |||||||||||
Sbjct 2198 AGTCACGGTTTGCGTTCAGGCCATGGACCTTCGAGCACTGAGTGCTTGCCTTGCAGCTGT 2257
Query 1951 TGTTTGTTCTTCAGAACAGCCACCTCTCCGTCCAATAGGAAGTCCTTCCGGGGATGGAGC 2010
|| ||||||||||| ||||||||||||||||| || |||||| || | || ||||| ||
Sbjct 2258 AGTATGTTCTTCAGAGCAGCCACCTCTCCGTCCTATCGGAAGTTCTGCTGGAGATGGTGC 2317
Query 2011 TTCAGTTGTCTTGGTATCTCTTCTTGAGAGAGCTGCTGAAGTAGTAGTAGTGG-TGGTGG 2069
||||||||||||| |||||||||||||||||||||| |||||||| || || | | |
Sbjct 2318 TTCAGTTGTCTTGATATCTCTTCTTGAGAGAGCTGCGGAAGTAGTGGTGGTTCCTCGAG- 2376
Query 2070 TTCCACCGCGTGTCAGCAACTCGAATGATGGACTCTGGAGAGCATCGTTTGATGAATTCT 2129
| | | || || | || || |||||||| ||||||||||| || |||||||||||||
Sbjct 2377 T-C-AT-GCATGG--G-AATTCTAATGATGGTCTCTGGAGAGCGTCATTTGATGAATTCT 2430
Query 2130 TCT-CTCTTCTTACTAAATATTGCAGGAGCAAGTATGAGACAATCCATGGTCAGAACCA- 2187
|| | |||||||| ||||| ||||| ||||||||||| ||||||| ||| ||||||||
Sbjct 2431 TCAAC-CTTCTTACCAAATACTGCAGAAGCAAGTATGACACAATCCGTGGACAGAACCAA 2489
Query 2188 GGATAATGCAGCTGATGTGTTGGAGCTAGCTATAAAGAGAGAAATGCCTGCCGAGCTTTT 2247
|| | |||||| ||||| |||||||| || |||||||| |||||||| || ||||||||
Sbjct 2490 GGG-AGTGCAGCGGATGTTTTGGAGCTGGCGATAAAGAGGGAAATGCCCGCTGAGCTTTT 2548
Query 2248 ACGTGCGAGTCTTCGTCATACCAATGAAAACCAGCGGAATT-TCTTACTTAA-CGTTGGT 2305
|||||||||||| ||||| |||||||| ||||| |||| | | ||| |||| | |||||
Sbjct 2549 ACGTGCGAGTCTGCGTCACACCAATGACGACCAGAGGAACTAT-TTA-TTAAACTTTGGT 2606
Query 2306 CGTAGTGCATC-GCCAGTTAGCGAATCAACAACTACAACGACGCGTGCAAGTGGTGGTCA 2364
|||| |||| || | |||| || || || || || |||||| ||||| ||
Sbjct 2607 CGTAAACCATCAGCAA-TTAGTGAGTCGGCATCT-CA--------TGCAAGGGGTGGACA 2656
Query 2365 GGTCAATTCTGAATTTGTGAGGGGTTAA 2392
| |||| ||||||| |||||||||||||
Sbjct 2657 GATCAACTCTGAATCTGTGAGGGGTTAA 2684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119778500370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5