BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946852
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14910.2 | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr... 1166 0.0
AT3G22425.2 | Symbols: IGPD | imidazoleglycerol-phosphate dehyd... 678 0.0
> AT4G14910.2 | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr4:8528167-8530114
REVERSE LENGTH=1276
Length=1276
Score = 1166 bits (631), Expect = 0.0
Identities = 743/796 (93%), Gaps = 11/796 (1%)
Strand=Plus/Plus
Query 23 CATGGAGTTGCTCTCTTCATCACCGGCTCAGCTTCTGAGACCAAATCTCAGCTCTAGGGT 82
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 9 CATGGAGTTGCTCTCTTCTTCACCGGCTCAGCTTCTGAGACCAAATCTCAGCTCTAGGGC 68
Query 83 TTTACAACCTCCACGAACATCAATCGCTTC-T-T-ATCCAT-TTCCTCCTCGATTCCTAC 138
||| | ||||||||||||||||||||||| | | |||| | |||||||||||||||
Sbjct 69 TTTGCTTCCTCCACGAACATCAATCGCTTCTTCTCATCC-TCCTCCTCCTCGATTCCT-- 125
Query 139 GG--ATGGATTCTCAATCTCAGCATCG-CCAATCTATCTCCTGCGCTTCTTCTCCTCCCG 195
|| ||| ||||||||||||||||||| || |||||||||||||||||| |||||||||
Sbjct 126 GGTAATGAATTCTCAATCTCAGCATCGTCC-ATCTATCTCCTGCGCTTCGCCTCCTCCCG 184
Query 196 GAGGTAACGGTTTTCCGGCGATTACCACCGCTTCTCCAATCGAATCAGCTCGAATAGGTG 255
||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 185 GAGATAACGGTTTTCCGGCGATTACCACGGCTTCACCCATCGAATCAGCTCGAATAGGTG 244
Query 256 AAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGCTTAATTTGGATGGTAATG 315
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 245 AAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGATTAATTTGGATGGTCATG 304
Query 316 GAGTTTCAGATAGCTCCACTGGGATTGCTTTCCTTGATCATATGTTAGATCAACTTGCTT 375
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 305 GAGTTTCAGATAGCTCCACTGGAATCCCTTTCCTTGATCATATGTTAGATCAACTTGCTT 364
Query 376 CACATGGATTGTTCGATGTACACGTAAGAGCTACTGGTGATATTCATATTGATGATCATC 435
||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 365 CACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATC 424
Query 436 ATACGAATGAAGATGTTGCGCTTGCCATTGGAACAGCTTTGTTGAAGGCACTTGGGGAGC 495
|||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
Sbjct 425 ATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGCACTTGGGGAAC 484
Query 496 GGAAAGGGATTAACCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCACTTATACATG 555
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 485 GGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCACTCATACATG 544
Query 556 TTTCCCTGGATCTATCTGGTCGACCGTATCTTGGCTACAATTTAGAGATTCCAACCCAGA 615
|||||||||||||||||||| |||| |||||||| ||||| |||||||||||||| ||||
Sbjct 545 TTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAACTTAGAGATTCCAACGCAGA 604
Query 616 GAGTAGGAACATACGACACTCAGTTGGTGGAGCATTTCTTCCAGTCATTAGTGAATACTT 675
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 605 GAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTT 664
Query 676 CTGGTATGACACTTCACATCCGACAGCTTGCTGGTAAAAACTCTCATCATATTATAGAAG 735
|||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 665 CTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATCACATAATAGAAG 724
Query 736 CGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTGATCCACGTCGCG 795
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 725 CGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTGATCCACGCCGCG 784
Query 796 GTGGGACAATACCAAG 811
||||||||||||||||
Sbjct 785 GTGGGACAATACCAAG 800
> AT3G22425.2 | Symbols: IGPD | imidazoleglycerol-phosphate dehydratase
| chr3:7951055-7953223 FORWARD LENGTH=1238
Length=1238
Score = 678 bits (367), Expect = 0.0
Identities = 517/591 (87%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 247 GAATAGGTGAAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGCTTAATTTGG 306
|||| || ||||| ||||||| |||||||||||| ||||| ||||||||| |||||||||
Sbjct 276 GAATTGGAGAAGTAAAGAGAGTAACAAAGGAAACGAATGTTTCAGTGAAGATTAATTTGG 335
Query 307 ATGGTAATGGAGTTTCAGATAGCTCCACTGGGATTGCTTTCCTTGATCATATGTTAGATC 366
|||||| ||||||| ||||||| || | ||| ||| |||||||||| |||||||||||||
Sbjct 336 ATGGTACTGGAGTTGCAGATAGTTCTAGTGGAATTCCTTTCCTTGACCATATGTTAGATC 395
Query 367 AACTTGCTTCACATGGATTGTTCGATGTACACGTAAGAGCTACTGGTGATATTCATATTG 426
|||||||||| ||||| ||||| ||||| ||||| ||||||||||||||| |||| ||||
Sbjct 396 AACTTGCTTCGCATGGCTTGTTTGATGTGCACGTTAGAGCTACTGGTGATGTTCACATTG 455
Query 427 ATGATCATCATACGAATGAAGATGTTGCGCTTGCCATTGGAACAGCTTTGTTGAAGGCAC 486
|||||||||| || ||||||||| | || |||||||||||||| ||| | || ||||| |
Sbjct 456 ATGATCATCACACTAATGAAGATATAGCTCTTGCCATTGGAACTGCTCTATTAAAGGCTC 515
Query 487 TTGGGGAGCGGAAAGGGATTAACCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCAC 546
|||| ||||| |||||||||||||| ||||| || || ||||||||||| |||||||| |
Sbjct 516 TTGGTGAGCGTAAAGGGATTAACCGGTTTGGTGACTTCACAGCTCCTCTAGATGAAGCGC 575
Query 547 TTATACATGTTTCCCTGGATC-TATCTGGTCGACCGTATCTTGGCTACAATTTAGAGATT 605
|||||||||||||| |||| | | ||||||||||| |||||||| ||||| || |||||
Sbjct 576 TTATACATGTTTCCTTGGA-CTTGTCTGGTCGACCATATCTTGGTTACAACTTGGAGATA 634
Query 606 CCAACCCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAGCA-TTTCTTCCAGTCATT 664
||||| |||||||| |||||||| || ||||||||||||||||| ||| |||||||| ||
Sbjct 635 CCAACTCAGAGAGTTGGAACATATGATACTCAGTTGGTGGAGCACTTT-TTCCAGTCGTT 693
Query 665 AGTGAATACTTCTGGTATGACACTTCACATCCGACAGCTTGCTGGTAAAAACTCTCATCA 724
|||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 694 GGTGAATACTTCTGGTATGACTCTTCACATCCGGCAGCTCGCTGGTGAAAACTCTCATCA 753
Query 725 TATTATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTGA 784
|| ||||| ||||| |||||||| ||||| || ||||| ||||||||||||||| ||||
Sbjct 754 CATAATAGAGGCGACGTTTAAGGCGTTTGCCAGAGCTCTACGACAAGCAACAGAGACTGA 813
Query 785 TCCACGTCGCGGTGGGACAATACCAAGTTCAAAAGGAGTCTTGTCGCGGTC 835
|||||| || |||||||||||||||||||||||||||||||| || |||||
Sbjct 814 TCCACGCCGTGGTGGGACAATACCAAGTTCAAAAGGAGTCTTATCACGGTC 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5