BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946853
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex... 846 0.0
AT2G36530.1 | Symbols: LOS2, ENO2 | Enolase | chr2:15320756-153... 422 8e-117
> AT3G48150.1 | Symbols: APC8, CDC23 | anaphase-promoting complex
subunit 8 | chr3:17779653-17782645 REVERSE LENGTH=1967
Length=1967
Score = 846 bits (458), Expect = 0.0
Identities = 509/533 (95%), Gaps = 5/533 (1%)
Strand=Plus/Plus
Query 1011 AGGGAATTTGACCACGTTGAAATCATGTTTAG-AGAACATCTGAGAAACGATCCCTATCG 1069
|||||||| ||||| ||||||||||||||| | ||||| ||||||||||||||| |||||
Sbjct 933 AGGGAATTCGACCAGGTTGAAATCATGTTT-GAAGAACTTCTGAGAAACGATCCATATCG 991
Query 1070 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1129
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051
Query 1130 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1189
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111
Query 1190 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAGTTATTTACTTCCGGAG 1249
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171
Query 1250 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1306
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231
Query 1307 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1366
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291
Query 1367 TTGTGATTATCGAACTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1426
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351
Query 1427 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1486
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411
Query 1487 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1539
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464
Score = 318 bits (172), Expect = 1e-85
Identities = 188/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1554 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1613
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592
Query 1614 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1673
|||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652
Query 1674 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1733
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712
Query 1734 CTCGATTATAGTGGAC 1749
||||||||||||||||
Sbjct 1713 CTCGATTATAGTGGAC 1728
Score = 255 bits (138), Expect = 8e-67
Identities = 153/160 (96%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 854 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 913
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775
Query 914 TTTAAACAATCACTGGATGAAAGAGtttttttCTTGGCAATGCGTATCAAGAACTCAGAA 973
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 776 CTTAAACAATCACTGGATGAAAGAGTTTTTT-CTTGGCAATGCTTATCAAGAACTCAGAA 834
Query 974 TGCACACTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 1013
||||||| | ||||||||||||||||||||||||||||||
Sbjct 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874
> AT2G36530.1 | Symbols: LOS2, ENO2 | Enolase | chr2:15320756-15323869
REVERSE LENGTH=1743
Length=1743
Score = 422 bits (228), Expect = 8e-117
Identities = 351/410 (86%), Gaps = 10/410 (2%)
Strand=Plus/Plus
Query 240 TTTGCACCAAACATTCAGGAGAACAAAGAAGGTCTAGAACTGCTTAAGACTGCCATTGAG 299
|||||||||||||||||||||||||| || ||||| ||| |||| |||||||| || |||
Sbjct 735 TTTGCACCAAACATTCAGGAGAACAAGGAGGGTCTTGAATTGCTCAAGACTGCTATCGAG 794
Query 300 AAGGCCGGATACACTGGCAAGGTTGTCATTGGAATGGATGTCGCTGCGTCTGAGTTCTAC 359
||||| ||||||||||| ||||||||||||||||||||||| || || || |||||||||
Sbjct 795 AAGGCTGGATACACTGGAAAGGTTGTCATTGGAATGGATGTTGCCGCTTCAGAGTTCTAC 854
Query 360 TCATCAGACAAGAAATACGACTTGAACTTCAAAGAAGAGAACAACGATGGTTCTCAAAAG 419
||| |||||||| |||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 855 TCAGAAGACAAGACCTACGACTTGAACTTCAAAGAAGAGAACAACAATGGCTCTCAGAAG 914
Query 420 ATCTCTGGAGATGCTCTCAAGGACTTGTACAAGTCATTCGTTTCAGAGTACCCTAAT-GT 478
|| ||||| |||||||| |||||| |||||||||| || || | |||||||| ||| ||
Sbjct 915 ATTTCTGGTGATGCTCTAAAGGACCTGTACAAGTCCTTTGTCGCTGAGTACCC-AATCGT 973
Query 479 ATCCATTGAAGACCCATTTGACCAAGATGACTGGGAGAACTATGTTGAA-ATGACCGTTG 537
|||||||| ||||||||||||||||||||||||||| |||||| | || |||||| ||
Sbjct 974 GTCCATTGAGGACCCATTTGACCAAGATGACTGGGAGCACTATGCT-AAGATGACCACTG 1032
Query 538 AATGTGGCGAGAAAG-TTCAAATCGTCGGTGATGATTTGCTGGTCACCAACCCCAAGAGA 596
| ||||| | || |||| || ||||||||||||||| ||||||| ||||||||||||
Sbjct 1033 AGTGTGGA-ACCGAGGTTCAGATTGTCGGTGATGATTTGTTGGTCACTAACCCCAAGAGA 1091
Query 597 GTTGAGAAGGCAATCA-ATGA-AATGTCTTGCAATGCTGTTCTATTGAAG 644
|||| ||||||||| | || || ||||||||||||| |||| ||||||
Sbjct 1092 GTTGCTAAGGCAATCGCA-GAGAA-GTCTTGCAATGCTCTTCTTTTGAAG 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93523615335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5