BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946855
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14900.1 | Symbols: | FRIGIDA-like protein | chr4:8521522-8... 2507 0.0
AT3G22440.1 | Symbols: | FRIGIDA-like protein | chr3:7959754-7... 1356 0.0
> AT4G14900.1 | Symbols: | FRIGIDA-like protein | chr4:8521522-8523705
REVERSE LENGTH=1934
Length=1934
Score = 2507 bits (1357), Expect = 0.0
Identities = 1548/1642 (94%), Gaps = 6/1642 (0%)
Strand=Plus/Plus
Query 1 CACCGTCCGATTAACCGGAGATGGAGTCTTCTCCCGATCCAGGTGAGTTGATCGAGTCAG 60
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 79 CACCGTACGATTAACCGGAGATGGAGTCTTCTCCCGATCCAGGAGAGTTGATTAAGTC-G 137
Query 61 -CTCAGCCGAGTTTCGTTGAATTTCAGAAGCAGACGTCTCTAATGACGAGCTGCAATCTT 119
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 138 TCTCAGCCGAGTTTCTTTGAGTTTCAGAAGCAGGCGTCTCTAATGACGAGCTGCAATCTT 197
Query 120 CTATGGAAAGAGCTCTCTGAGCATTTCACTTCTATGGAGCAGAATCTGATGAAGAAATCT 179
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 198 CTATGGAAAGAGCTCTCTGAGCATTTCACTTCCATGGAGCAAAACCTGATGAAGAAATCT 257
Query 180 GAAGCTTTGAAACAGATGATTGAAACCCTAGATAATCAAACGCAGAACTCGATTGAGTTA 239
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 258 GAAGCTCTGAGACAGATGATTGAAACCCTAGATAATCAAACGCAGAGCTCGATTGAGTTA 317
Query 240 CTCAAGCATCGTGAGGTGACTATAGACCACAGCGTTGAGATCGCGGCTGGGAAAGTTGAG 299
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 318 CTCAAGCATCGTGAGGTGACTATAGACCACAGCGTCGAGATCGCGGAGGGGAAAGTTGAG 377
Query 300 GAACGAGCTAGAGCCGCGTTGGATTCACTGGAGAAAGCTAGAG-CCGCGGATGAGGACGA 358
||||| | |||||| ||||||||||| |||||||||||||||| | | || ||| || ||
Sbjct 378 GAACGCGTTAGAGCGGCGTTGGATTCGCTGGAGAAAGCTAGAGACTGTGG-TGATGAAGA 436
Query 359 TAACGGAGAGGTTGACGACGGCGACGGGATTCTATCGGCGCTGAAATCGCTTTGTTTGAA 418
|| |||||| || ||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 437 TACCGGAGAAGTCGACGACGGCGACGGGCTTTTATCGGCGCTGAAGTCGCTTTGTTTGAA 496
Query 419 GATGGACGCAAGAGGATTTTGGGATTTTGTGATTGCGAGGAAGAAAGAATTGGAGAATCT 478
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 497 GATGGACGCAAGAGGATTTTGGGGGTTTGTGATTGCGAGGAAGAAGGAATTGGAGAATCT 556
Query 479 CCGGTCACAGATTCCGGTGGCGTTGGTTGATTGTGTGGATCCGCCGAAGTTAGTACTTGA 538
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 557 CCGGTCACAGATTCCTGTGGCGTTGGTAGATTGTGTGGATCCGCCGAAGTTAGTACTTGA 616
Query 539 AGCTGTATCTGAGGTTTTTCCGGTGGATAAAAGAGGCGGTGGAGAGAAAGTGAGCAACGA 598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 617 AGCTGTATCTGAGGTTTTTCCGGTGGATAAAAGAGGTGGTGGAGAGAAAGTGAGCAATGA 676
Query 599 TTTTGGATGGGCTTGTGTGGTGATTCTTGAGAGTTTGATTCCAGTTATGGTTGATCCAGT 658
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 677 TTTTGGATGGGCTTGTGTTGTGATTCTGGAGAGTTTGATTCCAGTTATGGTTGATCCAGT 736
Query 659 GATGGGGAAGTCTCGGCTGCTTGTAACTCCGAGCGTTAAGAAGAAAGCTAAGGAGATTGC 718
|||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 737 GATGGGGAAGTCTCGGCTACTTGTAACTCCTAGCGTTAAGGAGAAAGCTAAAGAGATTGC 796
Query 719 TGAGACGTGGAAGGCGAGCTTGGAAGAGAGAGGAGGGATTGAGAATGTGAAAACACCTGA 778
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TGAGACGTGGAAGGCTAGCTTGGAAGAGAGAGGAGGGATTGAGAATGTGAAAACACCTGA 856
Query 779 TGTTCATACGTTTCTGCAACATCTTGTGACATTTGGGATTGTGAAGAAGGATGATCTTGC 838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 857 TGTTCATACGTTTCTGCAACATCTTGTGACTTTTGGGATTGTGAAGAAGGATGATCTAGC 916
Query 839 TCTCTATAGGAAGCTTGTGGTTGGATCAGCTTGGCGTAAACAGATGCCTAAGCTTGCTGT 898
||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 917 TCTTTATAGGAAACTTGTGGTTGGTTCAGCTTGGCGTAAACAGATGCCAAAGCTTGCTGT 976
Query 899 TTCAGTTGGTTTGGGTGACCAAATGCCTGATATGATAGAAGAGTTGATCTTCAGGGGACA 958
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 977 TTCAGTTGGTTTGGGCGACCAAATGCCTGATATGATTGAAGAGTTGATAATCAGGGGACA 1036
Query 959 ACAGCTTGATGCGGTTCATTTCACTTTTGAAGTTGGTCTTGTGCACAAATTCCCTCCTGT 1018
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1037 ACAGCTTGATGCGGTTCATTTCACTTTTGAAGTTGGTCTTGTACACTTGTTCCCTCCTGT 1096
Query 1019 TCCTTTGCTTAAAGCTTATCTGAGGGATGCAAAGAAAGCAACAGCTTTAATCACAGAGGA 1078
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1097 TCCTTTGCTCAAAGCTTATCTGAGGGATGCAAAGAAAGCTACAGCTTTAATCACTGATGA 1156
Query 1079 GTCCAACAATCCTGGCCGATCTGCGCATCTTGTGGCGCGCAAGGAGCAATCAGCACTCAG 1138
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1157 TTCCAACAATTCTGGCCGATCTGCGCATCTTGTGGCGCGCAAAGAGCAATCAGCACTTAG 1216
Query 1139 AGCAGTCTTAAAATGCATAGAAGAATACAAACTCGAGGAAGAATTCCCGCCCGAGAATCT 1198
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1217 AGCAGTCTTAAAATGCATAGAAGAATACAAACTCGAGGAAGAATTCCCACCCGAGAATCT 1276
Query 1199 CAAGAAGCGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAGAGAAAACCAGCAGCAAT 1258
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1277 CAAGAAGAGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAGAGAAAACCAGCCGTGAT 1336
Query 1259 TCCTGCCAACAAGAGAACCCGAGCGAGCTACAACGGTCCAATGCCACCAGCCAAAGCAGG 1318
||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1337 TCCCGCCAACAAGAGAACCCGAGCAAGCTACAGCGGTCCAATGCCACCAGCCAAAGCAGG 1396
Query 1319 GCGTATCACAAACGCTTACGTCTCCTCCTTCCCACCGCCTCCACCAACATTCATCAGATC 1378
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1397 GCGTATCACAAACGCTTACGTCTCCTCTTTCCCACCGCCTCCACCAACATTCATCAGATC 1456
Query 1379 CCCAAGCCACTCACCTCAGTACGGTGTACCAGCATACACCACATCCTCACCTACCATCTA 1438
|| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1457 CCAAAGTCACTCACCTCAATACGGTGTACCAGCATACACCACATCCCCACCTACCATCTA 1516
Query 1439 CAGCAACAGGAGCCCTCCATACCAATACTCACCCGAGGCAGTTCACGGGTCATACCAAGT 1498
||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 1517 CAGCAACAGGAGCCCTCCATACCAATACTCACCCGAGGCGGTTCATGGTTCTTACCAAAC 1576
Query 1499 TTCTCCTGTCAGTTATCCAG-CAGCATATGGTACTTACTGCAGTCCGGTGGCTGCTCCAC 1557
||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1577 CTCTCCGGTCAGTTATCC-GACAGCATATGGTACCTACTGCAGTCCGGTGGCTGCTCCAC 1635
Query 1558 CCCCTCCAGTTTACCATCCTCACCCGCACCACCACCACCATATTCAGCATGCTTACTACT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CCCCTCCAGTTTACCATCCTCACCCGCACCACCACCACCATATTCAGCATGCTTACTACT 1695
Query 1618 GATTAGACAATGACAAAGGAAA 1639
||||||||||||||||||||||
Sbjct 1696 GATTAGACAATGACAAAGGAAA 1717
> AT3G22440.1 | Symbols: | FRIGIDA-like protein | chr3:7959754-7962200
FORWARD LENGTH=2013
Length=2013
Score = 1356 bits (734), Expect = 0.0
Identities = 1347/1633 (82%), Gaps = 81/1633 (5%)
Strand=Plus/Plus
Query 6 TCCGATTAACCGGAGATGGAGTC-TTCTCCCGATCCAGGTGAGTTGATC-GAGTCAGCTC 63
||||||| |||| ||||| ||| || ||||||||||| ||||| | | |||| |||||
Sbjct 88 TCCGATT--CCGGCGATGGGGTCAGTC-CCCGATCCAGGCGAGTT-AACTGAGTTAGCTC 143
Query 64 AGCCGAGTTTCGTTGAATTTCAGAAGCAGACGTC-TCTAATGACGAGCTGCAATCTTCTA 122
|||||||||||| || |||||||| |||||||| | | ||||| ||||| | |||||||
Sbjct 144 AGCCGAGTTTCGAGGAGTTTCAGAAACAGACGTCGT-TGATGACTAGCTGTACTCTTCTA 202
Query 123 TGGAAAGAGCTCTCTGAGCATTTCACTTCTATGGAGCAGAATCTGATGAAGAAATCTGAA 182
||| |||||||||| || || ||||||||| | |||||||||||||||||||||||||||
Sbjct 203 TGGCAAGAGCTCTCCGATCACTTCACTTCTCTAGAGCAGAATCTGATGAAGAAATCTGAA 262
Query 183 GCTTTGAAACAGATGATTGAAACCCTAGATAATCAAACGCAGAACTCGATTGAGT-TACT 241
|| ||||| |||||||||||||| |||||||| || || |||| |||| | |||| | ||
Sbjct 263 GCGTTGAAGCAGATGATTGAAACTCTAGATAACCAGACTCAGACCTCGCTCGAGTCT-CT 321
Query 242 CAAGCATCGTGAGGTGACTATAGACCACAGCGTTGAGATCGCGGCTGGGAAAGTTGAG-G 300
|||| | | ||||| || || ||||| ||||||||||||| ||||||||||| | | |
Sbjct 322 GAAGCGTAGAGAGGTAACAATCGACCATAGCGTTGAGATCGTAGCTGGGAAAGTAG-GTG 380
Query 301 AACGAGCTAGAGCCGCGT-TGGATTCACTGGAGAAAGCTAGAG-CCG-CG-GATGA-GG- 354
||||||||||||| || | | || || | ||||||||||||| | | | ||| ||
Sbjct 381 AACGAGCTAGAGCTGC-TCTTGAATCGTTAGAGAAAGCTAGAGATGGTTGTGGTGATGGT 439
Query 355 ----ACGAT-A--ACGGAGAGGTTGACGACGGCGACGGGATTCTATCGGCGCTGAAATCG 407
| ||| | ||| || |||||||| | || || |||| || || |||||||
Sbjct 440 TCTAATGATGATTCCGGTGATGTTGACGATGAAGAAGGTCTTCTTTCTGCTTTGAAATCT 499
Query 408 CTTTGT-TTGAAGATGGACGCAAGAGGATTTTGGGATTTTGTGATTGCGAGGAAGAAAGA 466
|||||| || || ||||| || ||||| |||||| | ||||||| ||||||||||| ||
Sbjct 500 CTTTGTCTT-AAAATGGATGCGAGAGGTTTTTGGAACTTTGTGACGGCGAGGAAGAAGGA 558
Query 467 ATTGGAGAATCTCCGGTCACAGATTCCGGTGGCGTTGGTTGATTGTGTGGATCCGCCGAA 526
|||||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||
Sbjct 559 GTTGGAGAATCTCCGGTCAAAGATTCCGGCGGCGTTGGTTGATTGTGTAGATCCGGCGAT 618
Query 527 GTTAGTACTTGAAGCTG-TATCTGAGGTTTTTCCGGTGGATAAAAGAGGCGGTGGAGAGA 585
|||||| |||||||| | |||||||||||||||||||||||| |||| ||||| |
Sbjct 619 GTTAGTGCTTGAAGC-GATATCTGAGGTTTTTCCGGTGGATACAAGA------GGAGATA 671
Query 586 AAGTGAGCAACGATTTTGGATGGGCTTGTGTGGTGATTCTTGAGAGTTTGATTCCAGTTA 645
|||| ||||| |||| ||||||||||||||| ||||||||||||||||| | || || |
Sbjct 672 AAGTTAGCAATGATTATGGATGGGCTTGTGTTGTGATTCTTGAGAGTTTAACACCTGTAA 731
Query 646 TGGTTGATCCAGTGATGGGGAAGTCTCGGCTGCTTGTAACTCCGAGCGTTAAGAAGAAAG 705
| |||||||||||||| ||||| || || ||||||| |||||||| |||||| ||||||
Sbjct 732 TTGTTGATCCAGTGATTGGGAAATCGAGGTTGCTTGTTACTCCGAGTGTTAAGGAGAAAG 791
Query 706 CTAAGGAGATTGCTGAGACGTGGAAGGCGAGCTTGGAAGAGAGAGGAGGGATTGAGAATG 765
|||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||
Sbjct 792 CTAAGGAGATTGCTGAGACGTGGAAGAAGAGTTTGGAAGAGAGAGGAAGGATAGAGAATG 851
Query 766 TGAAAACACCTGATGTTCATACGTTTCTGCAACATCTTGTGACATTTGGGATTGTGAAGA 825
|||| || |||||||||||||||||| |||| |||||||| |||||||| ||||| || |
Sbjct 852 TGAAGACTCCTGATGTTCATACGTTTTTGCAGCATCTTGTTACATTTGGAATTGTTAA-A 910
Query 826 AG-GATGATCTTGCTCTCTATAGGAAGCTTGTGGTTGGATCAGCTTGGCGTAAACAGATG 884
|| || ||||||||| | ||||| |||||||| |||||||| || |||||||||||||||
Sbjct 911 AGTGAAGATCTTGCTTTGTATAGAAAGCTTGTTGTTGGATCTGCGTGGCGTAAACAGATG 970
Query 885 CCTAAGCTTGCTGTTTCAGTTGGTTTGGGTGACCAAATGCCTGATATGATAGAAGAGTTG 944
||||||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 971 CCTAAGCTTGCGGTTTCTGTTGGTTTGGGTGATCAAATGCCTGACATGATTGAAGAATTA 1030
Query 945 ATCTTCAGGGGACAACAGCTTGATGCGGTTCATTTCACTTTTGAAGTTGGTCTTGTGCAC 1004
||| ||||||||||||||||||||| |||||||| |||| ||||||||| |||||| |
Sbjct 1031 ATCAGCAGGGGACAACAGCTTGATGCTGTTCATTTTACTTATGAAGTTGGGCTTGTGGAT 1090
Query 1005 AAATTCCCTCCTGTTCCTTTGCTTAAAGCTTATCTGAGGGATGCAAAGAAAG-CAACAGC 1063
|| |||||||||||||||||||| ||||||||||| ||||| |||||| ||| || ||||
Sbjct 1091 AAGTTCCCTCCTGTTCCTTTGCTCAAAGCTTATCTAAGGGACGCAAAG-AAGTCAGCAGC 1149
Query 1064 TT-TAATCACAGAGGAGTCCAACAATCCTGGCCGATCTGCGCATCTTGTGGCGCGCAAGG 1122
|| | |||| ||||| || | |||| |||||||| || ||||||| |||||||||||||
Sbjct 1150 TTCT-ATCATGGAGGACTCTAGCAATACTGGCCGAGCTACGCATCTCGTGGCGCGCAAGG 1208
Query 1123 AGCAATCAGCAC-TCAGAGCAGTCTTAAAATGCATAGAAGAATACAAACTCGAGGAAGAA 1181
|||||||||||| | || || || ||||||||||||||||| |||||||||||||||||
Sbjct 1209 AGCAATCAGCACTTAAG-GCGGTTTTAAAATGCATAGAAGAGTACAAACTCGAGGAAGAG 1267
Query 1182 TTCCCGCCCGAGAATCTCAAGAAGCGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAG 1241
||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1268 TTCCCTCCAGAGAACCTCAAGAAACGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAG 1327
Query 1242 AGAAAACCAGCAGCAATTCCTGCCAACAAGAGAACCCGAGCGAGCTACAACGGTCCAATG 1301
||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1328 AGAAAGCCAGCAGCTGTTCCTGCCAACAAAAGAACCCGAGCCAGCTACAACGGTCCAATG 1387
Query 1302 CCACCAGCCAAAGCAGGGCGTATCACAAACGCTTACGTCTCCTCCTTCCCACCGCCTCCA 1361
|||||||||||||| ||||||||||||||||| |||||||| |||||||| | || |
Sbjct 1388 CCACCAGCCAAAGCCGGGCGTATCACAAACGCATACGTCTCTTCCTTCCC---GT-TC-A 1442
Query 1362 CCAACATTCATCAGATCCCCAAGCCACTCACCTCAGTACGGTGT-ACCAGCA--TACACC 1418
|| || || | || | | |||| ||||| |||| | | ||||||| | |||
Sbjct 1443 TCAG-AT-CA-C----CCTCT--C-ACTCTCCTCAATACGCT-TCACCAGCAGCTT-ACC 1490
Query 1419 ACATCCTCACCTAC--CA-TCTACAGCAACAGGAGCCCTCCATA-CCAATACTCACCCGA 1474
||||| ||||||| || ||||||||||||| ||||| || || ||| ||||| || ||
Sbjct 1491 -CATCCCCACCTACAACAGTCTACAGCAACAGAAGCCCACCTTATCCA-TACTCTCCGGA 1548
Query 1475 GG-CAGTTCACGGG-TCATACCAAGTTTCTCCTGTCAGTTATCCAGCAGCATAT-GGT-A 1530
| || | | | || |||||||||| |||||| || |||| ||||| | | | ||| |
Sbjct 1549 GATCA-TCC-CAGGCTCATACCAAGGCTCTCCTATCGGTTACCCAGC-GTACAACGGTTA 1605
Query 1531 CT-TACTGCAGTCCGGTGGCTGCTCCACCCCCTCCAGTTTACCATCCTCACCCGCACCAC 1589
| || || |||| || |||||||| | |||||||||||||| || |||| || ||
Sbjct 1606 TTGTAATG--GTCCAGTTCCTGCTCCAGCTCCTCCAGTTTACCACCCACACCATCATCAA 1663
Query 1590 CACCACCATATTC 1602
|||||||| ||||
Sbjct 1664 CACCACCA-ATTC 1675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5