BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946858
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14870.1 | Symbols: SECE1 | secE/sec61-gamma protein transpo... 736 0.0
> AT4G14870.1 | Symbols: SECE1 | secE/sec61-gamma protein transport
protein | chr4:8517192-8517902 FORWARD LENGTH=711
Length=711
Score = 736 bits (398), Expect = 0.0
Identities = 504/555 (91%), Gaps = 8/555 (1%)
Strand=Plus/Plus
Query 8 ttCCCAATTTCGAAAAATGTCATTAACCGCACAATTCTCGCCGCCGGTCACCGGAATAAC 67
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 41 TTCCCAATTTCGAAAAATGTCACTAACCGCACAATTCTCGCCGCCGGTCACCGGAATAAC 100
Query 68 CAGGAG-CGTTCGGAATTTGAAATC-TCCACCGTCCT-CTCACCGTGTATTTCCGGTTTA 124
|||||| | | ||| || ||| | | ||| || || || ||||||||||||||||||
Sbjct 101 CAGGAGTC-TCCGGGATACAAAACCGT-CACTGT-CTAATCTCCGTGTATTTCCGGTTTA 157
Query 125 CACTGATATCAGAACTCCGGA-GATGAGAAATCTTAAGAAATCGTCGTATCTAGTGGCTA 183
|||||| || |||||| || || ||| ||||| | ||||||| ||| | | |||||||
Sbjct 158 CACTGAGATAAGAACT-ATGACGACGAGTAATCTGAGGAAATCGGCGTGTTTTGTGGCTA 216
Query 184 AGGCTATAGAACAGAGACGAGATACAGCTGGATCTGAATCGGAGTCAGAAGCGACTCCTT 243
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 217 AGGCTATAGAACAGAGACGAGATACAGCTGGATCTGAATCGGAATCAGAAGCGACTCCGT 276
Query 244 CACCGGCGGAAGAGAGTGGAAACGGAGGAGATAAGGAAGTGGAGATTAACGCAATCGGAG 303
||||||||||||||||||||| ||||| |||||||||||||||||||| ||| || ||||
Sbjct 277 CACCGGCGGAAGAGAGTGGAAGCGGAGAAGATAAGGAAGTGGAGATTAGCGCGATAGGAG 336
Query 304 CAGAGATAAAAGCGGCGATGGAGCAGAGGAAAGCAGCGGAGGAAGAGAAAGGAAAGAACG 363
||||||||||||| |||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 337 CAGAGATAAAAGCAGCGATGGAGCAGAGGAAAACGGCGGAGGAAGAGAAAGGGAAGAACG 396
Query 364 AGTTTCTTAGTGGAGTTGCGGAGGAAGTGAAGGAGATTGAGTGGCCGGCGTTTCAGAAAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AGTTTCTTAGTGGAGTTGCGGAGGAAGTGAAGGAGATTGAGTGGCCGGCGTTTCAGAAAG 456
Query 424 TTCTCGGAACTACCGGCGTCGTGCTCGGTGTTATCGCTGGTTCAAGCATTGTTTTGCTTA 483
|||||||||||||||||||||||||||||||||||||||| || ||| | || ||||| |
Sbjct 457 TTCTCGGAACTACCGGCGTCGTGCTCGGTGTTATCGCTGGCTCTAGCGTCGTCTTGCTCA 516
Query 484 CCGTCAATTTCCTTTTGGCTGAACTCTCTGATCGTGTGTTCATCGGAAAAGGTGTTCAAG 543
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 517 CTGTCAATTTCCTTTTGGCTGAACTCTCTGATCGAGTGTTCATCGGAAGAGGTGTTCAAG 576
Query 544 ACTTCTTCAGTTGAT 558
|||||||||| ||||
Sbjct 577 ACTTCTTCAGCTGAT 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5