BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946859
Length=586
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14860.1 | Symbols: atofp11, OFP11 | ovate family protein 11... 688 0.0
> AT4G14860.1 | Symbols: atofp11, OFP11 | ovate family protein
11 | chr4:8516531-8517079 FORWARD LENGTH=549
Length=549
Score = 688 bits (372), Expect = 0.0
Identities = 492/550 (89%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 23 ATGTCTAATTTTCTAAGGAAGAAGCTTCACCTTTGCTTCTCCTCCTCCGGTGTTCTCTCA 82
|||||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||||
Sbjct 1 ATGTCTAATTTTCTAAGGAAGAAGCTACACCTCTGTTTCTCCTCTTCCGGTGGTCTCTCA 60
Query 83 CCGGCGATTCCTTCTTCTCCGATCATTGTATCCAATCACAACCGC-CCATCTCA---TCA 138
||| |||||||||| ||||||||||| ||||| |||||||| ||| | |||||| |||
Sbjct 61 CCGTCGATTCCTTCCTCTCCGATCATCGTATCAAATCACAA-CGCTCAATCTCATCCTCA 119
Query 139 TCACACTCCATCACTCTTCATCAACAACTTTAATTCCCTCTACGATCACCTCTCTGTTTC 198
||||||||| ||| |||||||||||||||| || || || |||||||| |||||||||||
Sbjct 120 TCACACTCCCTCAATCTTCATCAACAACTTCAACTCTCTTTACGATCAGCTCTCTGTTTC 179
Query 199 CTCACCCCTCCACCGCCGCCACAGTTCTGATAACCCCGCCGGAATCTTCTCCACTAACCG 258
|| |||||||||||||| |||||||| || ||||||||||| | ||||||||||||||
Sbjct 180 TTCTCCCCTCCACCGCCGTCACAGTTCCGAGAACCCCGCCGGGGTGTTCTCCACTAACCG 239
Query 259 CCGC---GACGAAGAAGAAGACGAGACCTCCGCAGCCGTGTCAAAGCTTTTAAGCAGCGG 315
|||| || |||||||||||||| ||| || | |||| || |||||||||||| ||||
Sbjct 240 CCGCGAAGAAGAAGAAGAAGACGAAACCACCACCTCCGTTTCGAAGCTTTTAAGCGGCGG 299
Query 316 AACGGCGATTATGAAGCACATAGAGTCACCGGATCCGTACAGAGATTTTGGAAGATCAAT 375
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 300 GACGGCGATAATGAAGCACATAGAGTCACCGGATCCGTACAGAGATTTCGGAAGATCGAT 359
Query 376 GAGAGAAATGGTGGAAGCAAGAGATTTAACGAGAGACGTCGTCGCCGATAGAGAATACTT 435
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGAGAGATGGTGGAAGCTAGAGATTTAACGAGAGACGTCGTCGCCGATAGAGAATACTT 419
Query 436 ACACGAATTGTTATTCTGTTATCTCTCGTTGAATCCGAAACACACTCACAAATTCATCGT 495
|||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 420 GCACGAACTGTTATTCTGTTATCTCTATTTGAATCCGAAACATACTCACAGATTCATCGT 479
Query 496 CTCTGCTTTCGCCGATACACTCCTCTGGTTACTTTCTCCGTCGTCGTCGCCGGAGCACTT 555
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 480 CTCTGCTTTCGCCGATACGCTCCTCTGGTTACTTTCTCCGTCGCCGTCGCCAGAGCATTT 539
Query 556 TTTATCCTAA 565
||||||||||
Sbjct 540 TTTATCCTAA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28181356467
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5