BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946862

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14830.1 | Symbols: HSP1 | unknown protein; BEST Arabidopsis...   726    0.0  


> AT4G14830.1 | Symbols: HSP1 | unknown protein; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G22530.1); 
Has 77 Blast hits to 77 proteins in 12 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510908-8511928 
FORWARD LENGTH=1021
Length=1021

 Score =  726 bits (393),  Expect = 0.0
 Identities = 468/504 (93%), Gaps = 6/504 (1%)
 Strand=Plus/Plus

Query  1    TCACTCTCACaaaaaaaa-a-CCATGAGAATCCACCCATTACCTAGAAACAG-CAACAAC  57
            |||| | || |||||||| | |||||| ||||||||||||||| |||||| |  || |||
Sbjct  53   TCACACCCAAAAAAAAAAGACCCATGAAAATCCACCCATTACCCAGAAAC-GAAAATAAC  111

Query  58   AACATTCTGATCCATCACGCTCGTGATCCGACCCGAGAACCGGGAAAGAAGCTCCGACGT  117
            |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  112  AACAATCTGATCCATCACGCTCGTGATCCGACCCGAGAACCCGGAAAGAAGCTCCGTCGT  171

Query  118  CTCCCACATATCTTCAACCGTGTTCTAGAGCTGCCCTTGAAGTCGGACGCTGACGTGGAA  177
            |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||  
Sbjct  172  CTCCCACATATCTTCAGCCGTGTTCTAGAGCTGCCCTTGAAGTCAGACGCTGACGTGGCT  231

Query  178  GTTGAAGAGAGTCATGATTGCTTCAGGTTCGTCGCGGAAACTGATGGTGGTGGAGGAGGA  237
            ||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||
Sbjct  232  GTTGAAGAGAGTCATGACTGCTTCAGGTTCGTCGCGGAAACAGACGGGGGAGGAGGAGGA  291

Query  238  GGTGTGAGGGCTTACATGGTTGAGATTCATCCTGGTGTGGTCAAGATTCTGGTGAGAACC  297
            |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||
Sbjct  292  GGTGTGAGGGCTTACATGGTTGAGATTCATCCTGGTGTGACCAAGATTCTTGTGAGAACC  351

Query  298  AATGGTTCTTCGTCTCTTGGTTTGTCGCTTGATGAGCTTGAGCTTGACGTGTGGCGTTTC  357
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  AATGGTTCATCGTCTCTTGGTTTGTCGCTTGATGAGCTTGAGCTTGACGTGTGGCGTTTC  411

Query  358  AGGCTACCGGAAGCAACTAGGCCTGATCTCGTGACCGTGGATTGCGACGGTGATGGAGAA  417
            |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct  412  AGGCTACCGGAATCAACTAGGCCTGAGCTCGTTACCGTGGATTGCGACGGCGATGGAGAA  471

Query  418  TTGATTGTCACTGTGCCTAAGATTGAAGACAACTC-TAGAGATTTGATAGTGCTTGTACA  476
            |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||
Sbjct  472  TTGATTGTCACTGTGCCTAAGATTGAAGACAA-TGGTAGAGATTTGATAGTGCTTGTACA  530

Query  477  GTAATCTAATGTGATAGTGATCAA  500
            ||||||||||||| | ||||||||
Sbjct  531  GTAATCTAATGTGTTTGTGATCAA  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5