BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946863

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02130.1 | Symbols: RPK2, TOAD2, CLI1 | receptor-like protei...   466    9e-131


> AT3G02130.1 | Symbols: RPK2, TOAD2, CLI1 | receptor-like protein 
kinase 2 | chr3:380726-384405 FORWARD LENGTH=3680
Length=3680

 Score =  466 bits (252),  Expect = 9e-131
 Identities = 315/346 (91%), Gaps = 2/346 (1%)
 Strand=Plus/Plus

Query  157   ATGTGTCCCACTGGTGCTTCACCGAGATGTTAAACCAAGCAACATCCTCCTAGATGATGA  216
             ||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct  2961  ATGCGTCCCACGGGTGCTTCACCGAGATGTTAAACCGAGTAACATCCTCCTAGATGATGA  3020

Query  217   TTGCAACGCTTATTTATCAGATTTCGGGTTAGCGAGATTGCTTGGGACATCGGAAACGCA  276
              ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3021  CTGCAATGCGTATTTATCAGATTTCGGGTTAGCGAGATTGCTTGGGACATCGGAAACGCA  3080

Query  277   CGCAACAACAGGTGTGGCGGGTACGTTTGGGTATGTAGCGCCTGAGTATGCCATGACTTG  336
             ||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||| ||
Sbjct  3081  CGCAACAACTGGTGTGGCGGGTACGTTTGGGTATGTAGCTCCCGAGTACGCAATGACATG  3140

Query  337   CCGGATATCGGATAAAGCGGATGTCTACAGCTACGGAGTGGTGCTTCTAGAGCTGCTATC  396
             | || |||| || ||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct  3141  CAGGGTATCAGACAAAGCAGATGTATACAGCTACGGAGTGGTGCTTCTAGAGCTGCTTTC  3200

Query  397   GGTCAAGAAAGCGCTAGATCCGTCGTTTGTGTCGTATGGTAACGGATTCAACATTGTGCA  456
             || ||||||||| || |||||||| ||||||||||||||||| || |||||||| |||||
Sbjct  3201  GGACAAGAAAGCACTTGATCCGTCATTTGTGTCGTATGGTAATGGTTTCAACATAGTGCA  3260

Query  457   ATGGGCTTGTATGTTGTTGAGACAATGATGGGCAGAAG-AGTTTTT  501
             ||||||||||||||||||||||||| || ||||| ||| |||||||
Sbjct  3261  ATGGGCTTGTATGTTGTTGAGACAAGGAAGGGCA-AAGGAGTTTTT  3305



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5