BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946870

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26580.1 | Symbols:  | RING/U-box superfamily protein | chr4...   121    4e-27


> AT4G26580.1 | Symbols:  | RING/U-box superfamily protein | chr4:13411444-13413029 
REVERSE LENGTH=1409
Length=1409

 Score =  121 bits (65),  Expect = 4e-27
 Identities = 87/98 (89%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  150   GAAGTAAGGAAGCTTCCACGTTCACATAAGTTTCACTTTAACTGTGTAGATCAATGGCTT  209
             ||||| || ||||||||| |||| |||| ||||||| | || || |||||||||||||||
Sbjct  1041  GAAGTGAGAAAGCTTCCATGTTCGCATAGGTTTCACCTCAAATGCGTAGATCAATGGCTT  1100

Query  210   CATATCATATCGTGTTGTCCTCTTTGCAAACAAGATCT  247
             | |||||| |||||||||||||||||||||||||||||
Sbjct  1101  CGTATCATCTCGTGTTGTCCTCTTTGCAAACAAGATCT  1138



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5