BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946872
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14780.1 | Symbols: | Protein kinase superfamily protein | ... 1766 0.0
AT3G22750.1 | Symbols: | Protein kinase superfamily protein | ... 841 0.0
> AT4G14780.1 | Symbols: | Protein kinase superfamily protein
| chr4:8492832-8494591 FORWARD LENGTH=1363
Length=1363
Score = 1766 bits (956), Expect = 0.0
Identities = 1086/1148 (95%), Gaps = 12/1148 (1%)
Strand=Plus/Plus
Query 1 GTTTTGATTTG-AAAG-TTTTAAG-ACATGGAGAAGAAATCAGAAGAAGAGGGGAACAAC 57
||||||||||| |||| ||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 132 GTTTTGATTTGAAAAGATTTTAAGTA-ATGGAGAAGAAATCAGAAGAAGATGGGAACAAC 190
Query 58 ATC-AAGAAAGAGAAGATCTTTCGAGCTGATAAGATTGATTTGAAGAGTTTAGATAGACA 116
| | | |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 191 A-CGACGAAAGAAAAGATCTTTAGAGCGGATAAGATTGATTTGAAGAGTTTAGATAGACA 249
Query 117 GCTTGAGAAACATTTGAGTAGGGTTTGGTCGAGGAATCTTGAGGTGAATCTTAAAGCTAA 176
||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 250 GCTTGAGAAACATCTGAGTAGGGTTTGGTCGAGGAACCTTGAGGTGAATCCTAAAGCTAA 309
Query 177 GGAAGAATGGGATATTGATTTGGCTAAG-TTGGCAACAAGTAATGTTATTGCTCGTGGTA 235
|||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 310 GGAAGAATGGGAGATTGATTTGGCTAAGCTT-GAAACAAGTAATGTTATTGCTCGTGGTA 368
Query 236 CTTATGGTACTGTCTACAAAGGTACTTATGATGGACAAGATGTTGCAGTGAAAGTGCTTG 295
|||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 369 CTTATGGTACTGTCTACAAAGGCATTTATGATGGACAAGATGTTGCAGTGAAGGTGCTTG 428
Query 296 ATTGGGAAGATGATGGGAATGAAACAACGGCCAAGACCACTACAAATCGGGCTCTGTTCC 355
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct 429 ATTGGGAAGATGATGGGAATGAAACAACGGCCAAGACCGCTACAAATCGAGCTTTGTTCC 488
Query 356 GTCAGGAAGTCACTGTTTGGCACAAACTCAACCATCCGGATGTCACAAAGTTTGTTGGAG 415
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 489 GTCAAGAGGTCACTGTTTGGCACAAACTCAACCATCCAAATGTCACAAAGTTTGTTGGAG 548
Query 416 CGTCTATGGGAACAACGAATCTGAATATACGATCAGCTGATTC-AAGAGGCTCGTTGCCT 474
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 549 CGTCGATGGGAACAACGAATCTTAATATACGATCAGCTGATTCGAA-AGGCTCGTTGCCT 607
Query 475 CAACAAGCGTGTTGTGTGGTTGTGGAGTATCTTCCTGGTGGAACATTGAAACAACACTTG 534
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 608 CAACAAGCATGTTGTGTGGTTGTGGAATATCTTCCTGGTGGAACATTGAAACAACACTTG 667
Query 535 ATTCGTCATAAGAGCAAGAAACTCGCTTTTAAAGCTGTCATCAAACTCGCTCTTGATCTC 594
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 668 ATTCGTCATAAGAGCAAGAAACTCGCTTTTAAAGCCGTTATCAAACTCGCTCTTGATCTC 727
Query 595 GCGC-GGGGGCTATGCTATTTGCACTCAGAGAAGATTGTGCACCGCGATGTGAAAACAGA 653
|| | | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 728 GC-CAGAGGGCTAAGCTATTTGCACTCAGAGAAGATTGTCCACCGCGATGTGAAAACAGA 786
Query 654 GAATATGCTTTTGGATGCTAATAAGAATTTGAAAATAGCGGATTTTGGAGTAGCGCGGGT 713
||| ||||||||||||||| | |||||||||||||||||||||||||||||||| || ||
Sbjct 787 GAACATGCTTTTGGATGCTCAGAAGAATTTGAAAATAGCGGATTTTGGAGTAGCACGAGT 846
Query 714 GGAAGCTCTTAATCCAAAAGACATGACAGGAGAAACCGGTACTCTTGGATACATGGCTCC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGAAGCTCTTAATCCAAAAGACATGACAGGAGAAACCGGTACTCTTGGATACATGGCTCC 906
Query 774 TGAGGTCATTGACGGTAAGCCTTACAATAGAAGGTGCGATGTTTACAGCTTTGGGATATG 833
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 907 TGAGGTCATTGATGGTAAGCCATACAACAGAAGGTGCGATGTTTACAGCTTTGGGATATG 966
Query 834 CTTATGGGAAATCTACTGCTGCGATATGCCTTATCCTGATCTTAGCTTTGTCGATGTTTC 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TTTATGGGAAATCTACTGCTGCGATATGCCTTATCCTGATCTTAGCTTTGTCGATGTTTC 1026
Query 894 TTCCGCGGTTGTCTTACATAATCTGAGACCGGATATACCGAGATGCTGTCCGACTGCATT 953
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1027 TTCCGCGGTTGTCTTACATAATCTGAGACCGGAGATACCGAGATGCTGTCCGACTGCATT 1086
Query 954 GGCGACCATAATGAAGACATGTTGGGATGGGAATCCGCAGAAACGGCCGGAGATGAAGGA 1013
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGCGGGCATAATGAAGACATGTTGGGATGGGAATCCGCAGAAACGGCCGGAGATGAAGGA 1146
Query 1014 AGTGGTGAAGATGCTTGAAGGTATTGATACCAGTAAAGGCGGCGGAATGATACCGGAAGA 1073
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1147 GGTGGTGAAAATGCTTGAAGGTGTTGATACCAGTAAAGGTGGCGGAATGATACCGGAAGA 1206
Query 1074 TCAGAGTCCGGGCTGTTTCTGCTTTGCTCCGGCTCGTGGACCTTGAATTTCCCTTTCTAC 1133
||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1207 TCAAAGTCGGGGCTGTTTCTGCTTTGCTCCTGCTCGTGGACCTTAAATTTCCCTTTCTAC 1266
Query 1134 CTCTTTTT 1141
|||| |||
Sbjct 1267 CTCTGTTT 1274
> AT3G22750.1 | Symbols: | Protein kinase superfamily protein
| chr3:8037216-8039903 REVERSE LENGTH=2092
Length=2092
Score = 841 bits (455), Expect = 0.0
Identities = 888/1094 (81%), Gaps = 42/1094 (4%)
Strand=Plus/Plus
Query 52 AACAACATCAAGAAAGAGAAGATCTTT-CGAGCTGATAAGATTGATTTGAAGAGTTTAGA 110
||||| | ||||||||| | ||| ||| ||||||||||||||||||||||||| ||| ||
Sbjct 874 AACAATAGCAAGAAAGACATGAT-TTTCCGAGCTGATAAGATTGATTTGAAGAATTTGGA 932
Query 111 TAGACAGCTTGAGAAACATTTGAGTAGGGTTTGGTCGAGGAATC-TTGAGGTGAATCTTA 169
|| ||||| ||||||||| |||||||||||||||| | ||| | ||||| | | | |
Sbjct 933 TATCCAGCTAGAGAAACATCTGAGTAGGGTTTGGTC-AAGAAGCATTGAGAAGCACCCT- 990
Query 170 AAG-CTAAGGAAGAATGGGATATTGATTTGGCTAAGTTGGCA-ACAAGTAATGTTATTGC 227
||| ||||||| |||||||| ||||| |||||||| || | | | || ||||| |||||
Sbjct 991 AAGCCTAAGGAGGAATGGGAAATTGAATTGGCTAAATTAG-AGATGAGGAATGTCATTGC 1049
Query 228 TCGTGGTACTTATGGTACTGTCTACAAAGGTACT-TATGATGGACAAGATGTTGCAGTGA 286
||||||| ||||||||| |||||||||||| | | |||||||| ||||||||||| ||||
Sbjct 1050 TCGTGGTGCTTATGGTATTGTCTACAAAGGCA-TATATGATGGTCAAGATGTTGCTGTGA 1108
Query 287 AAGTGCTTGATTGGGAAGATGATGGGAATGAAACAACGGCCAAGACCA-CTACAAAT-CG 344
|||| |||||||||| ||| ||||| | | |||||||| ||| || || | | ||
Sbjct 1109 AAGTACTTGATTGGGGAGAAGATGGTTACGCGACAACGGCTGAGA-CATCTGC-TCTACG 1166
Query 345 GGC-TCTGTTCCGTCAGGAAGTCACTGTTTGGCACAAACTCAACCATCCGGATGTCACAA 403
|| || || ||||| ||||| | |||||||| || || ||||||| |||||||||
Sbjct 1167 TGCTTC-ATTTCGTCAAGAAGTTGCGGTTTGGCATAAGCTTGACCATCCTAATGTCACAA 1225
Query 404 AGTTTGTTGGAGCGTCTATGGGAACAACGAATCTGAATATA-C--GATCAGCTGATTCAA 460
|||||| ||||| || ||||||||| ||||| |||| ||| | ||||||||| |
Sbjct 1226 GGTTTGTGGGAGCATCAATGGGAACAGCGAATTTGAAGATACCTTCATCAGCTGAGAC-G 1284
Query 461 GAG-GCTCGTTGCCTCAACAAGCGTGTTGTGTGGTTGTGGAGTATCTTCCTGGTGGAACA 519
||| |||||||||||||| ||| |||||||| |||||||||||| | ||||| |||||
Sbjct 1285 GAGAACTCGTTGCCTCAACGAGCTTGTTGTGTCGTTGTGGAGTATATCCCTGGAGGAAC- 1343
Query 520 T-TGAAACAACACTTGATT-CGTCATAAGAGCAAGAAACTCGCTTTTAAAGCT-GT-CAT 575
| | || || | ||| || || | | | | ||||||||||||||||||| | || |
Sbjct 1344 TCTTAAGCAGTATTTG-TTCCGAAACAGGCGAAAGAAACTCGCTTTTAAAG-TCGTGGTT 1401
Query 576 CAAACTCGCTCTTGATCTCGCGCGGGGGCTATGCTATTTGCACTCAGAGAAGATTGTGCA 635
| |||||||||| |||||| | || ||| || | |||||||| ||||||| |||||| ||
Sbjct 1402 C-AACTCGCTCTCGATCTCTCCCGAGGGTTAAGTTATTTGCATTCAGAGAGGATTGTTCA 1460
Query 636 CCGCGATGTGAAAACAGAGAATATGCTTTTGGATGCTAATAAGAATTTGAAA-ATAGCGG 694
||||||||||||||||||||||||||||||||| | | | |||| | ||| || || |
Sbjct 1461 TCGCGATGTGAAAACAGAGAATATGCTTTTGGATTATCAGAGGAATCT-AAAGATTGCTG 1519
Query 695 ATTTTGGAGTAGCGCGGGTGGAAGCTCTTAATCCAAAAGACATGACAGGAGAAACCGGTA 754
||||||| || || | || ||||||| ||||||||||||||||| |||||||| || |
Sbjct 1520 ATTTTGGGGTTGCTAGAGTTGAAGCTCAGAATCCAAAAGACATGACTGGAGAAACTGGAA 1579
Query 755 CTCTTGGATACATGGCTCCTGAGGT-CATTGACGGTAAGCCTTACAATAGAAGGTGCGAT 813
||||||||||||||||||| ||||| | |||| || ||||| ||||| ||||| || |||
Sbjct 1580 CTCTTGGATACATGGCTCCAGAGGTTC-TTGATGGCAAGCCATACAACAGAAGATGTGAT 1638
Query 814 GTTTACAGCTTTGGGATATGCTTATGGGAAATCTACTGCTGCGATATGCCTTATCCTGAT 873
||||||||||||||||||||||| ||||| || || || || ||||||||||||||||||
Sbjct 1639 GTTTACAGCTTTGGGATATGCTTGTGGGAGATTTATTGTTGTGATATGCCTTATCCTGAT 1698
Query 874 CTTAGCTTTG-TCGATGTTTCTTCCGCGGTTGT-CTTACATAATCTGAGACCGGATATAC 931
|| ||||||| | ||||||||||| || ||||| | | || ||||||||||||||||| |
Sbjct 1699 CTCAGCTTTGCT-GATGTTTCTTCTGCTGTTGTTCGT-CAGAATCTGAGACCGGATATTC 1756
Query 932 CGAGATGCTGTCCGACTGCATTGGCGACCATAATGAAGACATGTTGGGATGGGAATCCGC 991
| ||||| ||||| || |||||||||||||||||||||| ||||||||| | ||||||
Sbjct 1757 CAAGATGTTGTCCAACAGCATTGGCGACCATAATGAAGAGATGTTGGGAAGCTAATCCGG 1816
Query 992 AGAAACGGCCGGAGATGAAGGAAGTGGTGAAGAT-GCTTGAAGGTATTGATACCAGTAAA 1050
||||||| || |||||| ||||||| |||| | | |||||||| | | || |||| |||
Sbjct 1817 AGAAACGACCAGAGATGGAGGAAGTTGTGA-GTTTGCTTGAAGCTGTCGACACCACCAAA 1875
Query 1051 GGCGGCGGAATGATACCGGAAGATCAGAGTCCGGGCTGTTTCTGCTTTG-CTCCGGCTCG 1109
||||| |||||||| |||||||||||||| || |||||||||||||||| ||| || |||
Sbjct 1876 GGCGGTGGAATGATCCCGGAAGATCAGAGACCTGGCTGTTTCTGCTTTGTCTCTGG-TCG 1934
Query 1110 TGGACCTTGAATTT 1123
||| || | |||||
Sbjct 1935 TGGTCCCT-AATTT 1947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5