BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946890
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14710.5 | Symbols: ATARD2 | RmlC-like cupins superfamily pr... 981 0.0
AT4G14716.1 | Symbols: ATARD1, ARD1 | acireductone dioxygenase ... 832 0.0
AT2G26400.1 | Symbols: ARD, ATARD3, ARD3 | acireductone dioxyge... 723 0.0
> AT4G14710.5 | Symbols: ATARD2 | RmlC-like cupins superfamily
protein | chr4:8424703-8426471 REVERSE LENGTH=1030
Length=1030
Score = 981 bits (531), Expect = 0.0
Identities = 579/603 (96%), Gaps = 0/603 (0%)
Strand=Plus/Plus
Query 41 GATGGAAGAGAAGATGTGATCCAGGCTTGGTATATGGATGACAGCGAAGAGGATCAGAGA 100
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 255 GATGGAAGAGAAGAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGA 314
Query 101 CTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGATAAACTTGCAGAGCTGGGA 160
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 315 CTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGAGCTGGGA 374
Query 161 GTACTTAGCTGGAGACTTGATGCTGATAACTACGAAACCGATGAGGAATTGAAAAAGATC 220
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 375 GTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATC 434
Query 221 CGCGAATCTCGTGGTTACTCCTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 280
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 435 CGCGAATCTCGTGGTTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 494
Query 281 AACTATGAAGAGAAAGTAAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 340
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 554
Query 341 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 614
Query 401 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTC 674
Query 461 ACCGTGGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTGTGG 520
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 675 ACCGTAGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGG 734
Query 521 ACACCATACAATCGCCCACACGACCATCTCCCTGCAAGGAAAGAGTACGTCGATAATTTC 580
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 735 ACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAGAGTACATCGATAATTTC 794
Query 581 GTCAAGGTGAGTGGGGGCGGTGCCATAGACGCATCAGCGTAGAGGACTCTCAGTCTCAGG 640
|| ||||||| || || |||| ||||||||| ||||| ||||||| ||||||||| | |
Sbjct 795 GTGAAGGTGAATGAAGGTGGTGTCATAGACGCGTCAGCCTAGAGGATTCTCAGTCTTATG 854
Query 641 CAT 643
|||
Sbjct 855 CAT 857
Score = 67.6 bits (36), Expect = 1e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 5 GAAGAGGAACAAACAACCATGGGTGAAGTGGTTAAG 40
||||||||||||||||||||||||||||||||||||
Sbjct 94 GAAGAGGAACAAACAACCATGGGTGAAGTGGTTAAG 129
> AT4G14716.1 | Symbols: ATARD1, ARD1 | acireductone dioxygenase
1 | chr4:8430207-8431945 REVERSE LENGTH=934
Length=934
Score = 832 bits (450), Expect = 0.0
Identities = 528/566 (93%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 16 AACAACCATGGGTGAAGTGGTTAAGGATGGAAGAGAAGATGTGATCCAGGCTTGGTATAT 75
||| || |||||||||| ||| |||||||| |||||||| ||||| || |||||||||||
Sbjct 73 AAC-ACGATGGGTGAAGCGGTCAAGGATGGGAGAGAAGAAGTGATTCAAGCTTGGTATAT 131
Query 76 GGATGACAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATC 135
|||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 132 GGATGATAGTGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAAGAGTTTGTATC 191
Query 136 TTTGGATAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTACGA 195
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 192 GTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGA 251
Query 196 AACCGATGAGGAATTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTTTG 255
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 252 AACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGGACTTTTG 311
Query 256 TGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGAGAAAGTAAAGAGCTTTTTCGAAGA 315
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 312 TGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGA 371
Query 316 ACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGC-GGTTACTTTGATG 374
|||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 372 ACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAA-CTGGTTACTTTGATG 430
Query 375 TGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCT 434
|||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 431 TGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTATGATAGTCT 490
Query 435 TACCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAACTATATCAAGGCAATGC 494
|||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 491 TACCTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGGCAATGC 550
Query 495 GGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGCCCACACGACCATCTCCCTG 554
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 551 GGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTG 610
Query 555 CAAGGAAAGAGTACGTCGATAATTTC 580
|||||||||| || |||||||| |||
Sbjct 611 CAAGGAAAGAATATGTCGATAACTTC 636
> AT2G26400.1 | Symbols: ARD, ATARD3, ARD3 | acireductone dioxygenase
3 | chr2:11231800-11233295 REVERSE LENGTH=879
Length=879
Score = 723 bits (391), Expect = 0.0
Identities = 544/618 (88%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 19 AACCATGGGTGAAGTGGTTAAGGATGGAAGAGAAGATGTGATCCAGGCTTGGTA-TATGG 77
|||||||||||||| | ||||||| || ||||| ||||| || |||||||| | |||
Sbjct 18 AACCATGGGTGAAGCCGCTAAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACT-TGG 76
Query 78 ATGA-CAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCT 136
|| | || ||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 77 ATAATAAG-GAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCT 135
Query 137 TTGGATAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTACGAA 196
||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 136 TTGGACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAA 195
Query 197 ACCGATGAGGAATTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTTTGT 256
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 196 ACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGT 255
Query 257 GAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGAGAAAGTAAAGA-GCTTTTTCGAAGA 315
||||| || || || |||||||||||||||||||| |||||||||| | ||||| |||||
Sbjct 256 GAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTT-GAAGA 314
Query 316 ACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGT 375
|||||| || | |||||||||||||||||||||| | |||||||| || |||||||||||
Sbjct 315 ACATTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGT 374
Query 376 GAGGGATCGCAATGA-AGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCT 434
|||||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct 375 GAGGGATCTCAATGATAT-TTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCT 433
Query 435 TACCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAACTATATCAAGGCAATGC 494
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 434 TCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGC 493
Query 495 GGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGCCCACACGACCATCTCCCTG 554
| ||||||||||||| ||| |||||||| | || ||||||||||| |||||||| ||||
Sbjct 494 GTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTG 553
Query 555 CAAGGAAAGAGTACGTCGATAAT-TTCGTCAAGGTGAGTGGGGGCGGTGCCATAGACGCA 613
||||||||| ||| | || || ||| | ||||||| ||||| | || |||||||||
Sbjct 554 CAAGGAAAGCGTATAT-GAAAAAATTCTTGAAGGTGATTGGGGACCGTAACATAGACGCT 612
Query 614 TCAGCGTAGAGGACTCTC 631
|||||||| || ||||||
Sbjct 613 TCAGCGTAAAGAACTCTC 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31044702846
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5