BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946898
Length=2806
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr... 2307 0.0
AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock prot... 1327 0.0
> AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr4:8410054-8412557
FORWARD LENGTH=1872
Length=1872
Score = 2307 bits (1249), Expect = 0.0
Identities = 1528/1661 (92%), Gaps = 26/1661 (2%)
Strand=Plus/Plus
Query 440 CAC-AAAC-GAAGCCCGGGGAGACCAGTGTGGGAGTAGAGGCATTGGTGATTAGTCTTCT 497
||| |||| ||| | |||||| |||| |||||||||| || |||||| |||||||||||
Sbjct 222 CACTAAACGGAATCTCGGGGATACCAAAGTGGGAGTAGCGGTATTGGTAATTAGTCTTCT 281
Query 498 TGATGATTCTCAAATCAGGGATTTGTTGAAAGAAGCTGGT-TCTGTACCAGAGAAGGTTA 556
||| |||||||||||||| ||| ||||||||||||||||| | ||| || ||||||||||
Sbjct 282 TGAAGATTCTCAAATCAGTGATGTGTTGAAAGAAGCTGGTGT-TGTGCCTGAGAAGGTTA 340
Query 557 AGTCTGAGGTGGAGAAGCTTGGTGGCGAGGTAAACCTTCAGGCTTTGAAGACTTATGGGA 616
|||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||
Sbjct 341 AGTCTGAGGTGGAGAAGCTTCGTGGGGAGGTAATCCTTCGGGCTTTGAAGACTTATGGGA 400
Query 617 TAGATTTGGTTGAGCAAGTAGGTAAGCTTGATCCTGTCATTGGCCGAGACAAGGAGATTA 676
||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 401 CAGATTTGGTTGAGCAAGCAGGTAAGCTTGATCCTGTCATTGGCCGACACAGGGAGATTA 460
Query 677 GAAGAGTTGTTG-GGATTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTTATTGGTGAG 735
||||||| ||| || |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 461 GAAGAGTAATTGAGG-TTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTCATCGGTGAG 519
Query 736 CCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATATTGAAAGGAGAC 795
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 520 CCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATACTGAAAGGAGAC 579
Query 796 GTGCCTATCAATCTTACCGATGTAAAGCTCT-TTTCCTTGGACTTGGGTGCAATGGTTGC 854
||||||||||||||||| | |||||| || | |||||||||| || ||||||||||||||
Sbjct 580 GTGCCTATCAATCTTACTGGTGTAAAACT-TATTTCCTTGGAATTTGGTGCAATGGTTGC 638
Query 855 CGGAACAACACTACGTGGACAATTCGAAGAAAGATTGAAGTCGGTCTTGAAAGAAGTTGA 914
||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 639 TGGAACAACACTCCGTGGACAATTCGAAGAAAGATTGAAGTCTGTCTTGAAAGCAGTTGA 698
Query 915 -GAATGCTCAAGGCAAAGTTGTTCTCTTTATCGATGAGATCCACATGGCTCTTGGTGC-T 972
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 699 GGAA-GCTCAAGGCAAAGTTGTTCTGTTTATCGATGAGATCCACATGGCTCTTGGTGCTT 757
Query 973 GGAAAGGCAAGTGGCTCCACGGATGCTGCTAATTTGCTTAAGCCTATGTTAGCAAGAGGT 1032
| ||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 758 GCAAA-GCAAGTGGGTCAACGGATGCTGCTAAGTTGCTTAAGCCTATGTTAGCAAGAGGT 816
Query 1033 CAGCTTCGTTGCATTGGTGCTACTACGCTTGAGGAATACCGAACACATATCGAGAAAGAT 1092
|||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 817 CAGCTTCGTTTCATTGGAGCTACTACGCTTGAGGAATACCGAACACATGTTGAGAAAGAT 876
Query 1093 GCTGCATTCGAGAGAAGGTTCCAACAAGTGTATGTAGCTGAGCCTAGTGTCCCTGACACT 1152
||||| || |||||||||||||| ||||||| |||||||||||||||||| ||||| |||
Sbjct 877 GCTGCTTTTGAGAGAAGGTTCCAGCAAGTGTTTGTAGCTGAGCCTAGTGTGCCTGATACT 936
Query 1153 ATCAGTATTCTTCGAGGGCTTAAAGAAAAATATGAAGGACACCATGGTGTTCGTATCCAA 1212
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 937 ATCAGTATTCTTCGAGGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTCGTATCCAA 996
Query 1213 GACAGTGCTCTTGTTGTTTCTGCTCAATTGTCTGCGCGTTACATCACTGCTCGACGTTTA 1272
|| || ||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 997 GATAGAGCTCTAGTTCTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTA 1056
Query 1273 CCGGATAAGGCAATTGATTTGGTTGATGAGTCTTGTGCACATGTGAGAGTCCAGCTTGAT 1332
|||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||||
Sbjct 1057 CCGGATAAGGCAATTGATTTAGTTGATGAGTCTTGTGCACATGTCAAAGCCCAGCTTGAT 1116
Query 1333 AGTCAACCAGAAGAAATTGATTA-CCTTGAAAGAAAAACAATGCAACTAAAGATAGAGAT 1391
| |||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||
Sbjct 1117 ATTCAACCAGAAGAAATTGA-TAGCCTTGAAAGAAAAGTAATGCAACTAGAGATAGAGAT 1175
Query 1392 TCATGCTCTCGAAAAGGAGAAGGACGACAAAGCTAGCGAAGCTCGCCTAGT-CGAAGTGA 1450
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1176 TCATGCTCTCGAAAAGGAGAAGGACGACAAAGCTAGCGAAGCTCGTCT-TTCCGAGGTGA 1234
Query 1451 GGAAAGAGCTTGATGACTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAGAATG 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1235 GGAAAGAGCTTGATGACTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGG 1294
Query 1511 AGAAAAGGATAATTAATGAAACTCGGAGTCTTAAACAGAAACGAGATGAGCTCATGATTG 1570
|||||| ||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 1295 AGAAAAAGATCATTAATGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGATTG 1354
Query 1571 CTCTACAAGAGGCTGAGAGACAATATGACCTTCCTAAAGCTGCTGATCTAAGATATGGGG 1630
||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||| |
Sbjct 1355 CTCTACAAGAGGCTGAGAGACAACATGACGTTCCTAAAGCTGCTGTTCTAAAATATGGTG 1414
Query 1631 CAATTCAGGAAGTAGAATCCGCGATAGCAAAATTAGAAAAGAGTGTTAAAGATAACGTGA 1690
||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||
Sbjct 1415 CAATTCAGGAAGTAGAATCTGCGATAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGA 1474
Query 1691 TGCTTACGGAAACTGTTGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGA 1750
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TGCTTACAGAAACTGTTGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGA 1534
Query 1751 TTCCAGTGACT-GCACTTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGG 1809
| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1535 TACCAGTGACTAG-ACTTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAG 1593
Query 1810 TTGCACGAGAGAGTTGTTGGACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTA 1869
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1594 TTGCACGAGAGAGTTGTTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTA 1653
Query 1870 AGGTCAAGGGTTGGACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGT 1929
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1654 AGGTCGAGGGTTGGACTAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGT 1713
Query 1930 CCAACTGGTGTTGGTAAAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTAC-GA 1988
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| || |
Sbjct 1714 CCAACTGGTGTTGGTAAAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGACAG- 1772
Query 1989 TGAAAACCTACTTGTTAGGCTTGATATGTCGGAGTATA-TGGATAGATCCACTGTTAATA 2047
|||||||||||| ||||||||||||||||||||||||| || | | || | |||||||||
Sbjct 1773 TGAAAACCTACTCGTTAGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTGTTAATA 1831
Query 2048 AACTTATAGGGGCACCACCCGG----GTACATTGGTCATGA 2084
||||||||||||||||||| || |||||||||||||||
Sbjct 1832 AACTTATAGGGGCACCACCTGGATACGTACATTGGTCATGA 1872
Score = 213 bits (115), Expect = 8e-54
Identities = 197/235 (84%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 22 ATGAATTATAC-GAGATTTGACCCCAAGGTCCAGCTTATACTTGCAAAGGCTCGAACACT 80
|||||| || | || |||||||||||| ||| ||||||||||||| ||||||| |||
Sbjct 1 ATGAATGAT-CTGAAATTTGACCCCAATGTCAAGCTTATACTTGCCTCGGCTCGATCACA 59
Query 81 TGCCATCGT-ATCGTCACATGTTCAAGTAACTCCTCTGCATCTCGGAGTTGGTTTGATTT 139
|||||| || || |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 60 TGCCAT-GTCATTGTCACATGGTCAAGTAACTCCTCTGCATCTCGGAGTTACTTTGATTT 118
Query 140 CTGA-CAAGACTGGTGTTTTCTATCGAGCAATCACCACTGCAGGAGGAAG-CGA-A-CTC 195
|||| | |||| |||||||||||||||||||||||| |||||||| | | ||| | |||
Sbjct 119 CTGATCT-GACTAGTGTTTTCTATCGAGCAATCACCAGTGCAGGAG-ACGGCGATATCTC 176
Query 196 TTGGCTCAGTCAGCTGTCAAAGTCATCAAACAAGCCTTAAAAAAGCTCCCAAAAC 250
| | ||||||||| |||||| || ||||| ||| ||||| | |||||| | ||||
Sbjct 177 T-G-CTCAGTCAGTTGTCAACGTTATCAACCAATCCTTATACAAGCTCACTAAAC 229
> AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein
101 | chr1:27936508-27940190 REVERSE LENGTH=3165
Length=3165
Score = 1327 bits (718), Expect = 0.0
Identities = 1487/1852 (80%), Gaps = 78/1852 (4%)
Strand=Plus/Plus
Query 593 TTCAGGCTTTGAAGACTTATGGGATAGATTTGGTTGAGCAAGTAGGTAAGCTTGATCCTG 652
|||| ||||| ||||||||||| | ||||||||||||||||| ||| |||||||||||||
Sbjct 704 TTCAAGCTTTAAAGACTTATGGAAGAGATTTGGTTGAGCAAGCAGGGAAGCTTGATCCTG 763
Query 653 TCATTGGCCGAGACAAGGAGATTAGAAGAGTTGTTG-GGATTCTCTCAAGGAGAACCAAG 711
| ||||| || || |||||||||||||||| | || ||||||| || |||||||| |||
Sbjct 764 TGATTGGTCGTGATGAGGAGATTAGAAGAGTCG-TGAGGATTCTTTCGAGGAGAACGAAG 822
Query 712 AACAACCCCGTGCTTATTGGTGAGCCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTG 771
||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct 823 AACAATCCTGTGCTTATTGGAGAGCCAGGAGTTGGTAAAACAGCTGTGGTTGAAGGTTTA 882
Query 772 GCTCAAAGGATAT-TGAAAGGAGACGTGCCTATCAATCTTACCGATGTAAAG-CTCTTTT 829
|| |||||||| | |||||||||| ||||| | || |||||| ||||| || | |||
Sbjct 883 GCACAAAGGAT-TGTGAAAGGAGATGTGCCCAACAGTCTTACTGATGT-GAGATTAATTT 940
Query 830 CCTTGGACTTGGGTGCAATGGTTGCCGGAAC-AACACTA-CGTGGACAATTCGAAGAAAG 887
| |||||| ||||||| | ||||| || | || | || || ||| | || ||||||||
Sbjct 941 CGTTGGACATGGGTGCGTTAGTTGCTGGTGCTAA-A-TACCGAGGAGAGTTTGAAGAAAG 998
Query 888 ATTGAAGTCGGTCTTGAAAGAAGTTGAGAATGCTCAAGGCAAAGTTG-TTCTCTTTATCG 946
||||| || || ||||||||||||||| | ||| ||||||||| || |||||||||| |
Sbjct 999 GTTGAAATCTGTTTTGAAAGAAGTTGAGGACGCTGAAGGCAAAG-TGATTCTCTTTATTG 1057
Query 947 ATGAGATCCACATGGCTCTTGGTGCTGG--AAA-GGCAAGTGGCTCCACGGATGCTGCTA 1003
||||||| || ||| |||||||||||| ||| | ||| || || | |||||| ||||
Sbjct 1058 ATGAGATTCATTTGGTTCTTGGTGCTGGCAAAACTG-AAG-GG-TCGATGGATGCAGCTA 1114
Query 1004 ATTTGCTT-AAGCCTATGTTAGCAAGAGGTCAGCTTCGTTGCATTGGTGCTACTACGCTT 1062
|| || || ||||| |||||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct 1115 ATCTG-TTCAAGCCCATGTTAGCTAGAGGGCAGCTTCGATGCATTGGTGCTACAACGCTT 1173
Query 1063 GAGGAATAC-CGAACACATATCGAGAAAGATGCTGCATTCGAGAGAAGGTTCCAACAAGT 1121
|| |||||| ||| | || | |||||||||||||| || ||||| ||||||||||||||
Sbjct 1174 GAAGAATACAGGAA-ATATGTTGAGAAAGATGCTGCCTTTGAGAGGAGGTTCCAACAAGT 1232
Query 1122 GTATGTAGCTGAGCCTAGTGTCCCTGACACTATCAGTATTCTTCGAGGGCTTAAAGAAAA 1181
||||| || ||||| ||||| |||||||| || ||||| ||| |||| || || || ||
Sbjct 1233 CTATGTTGCGGAGCCAAGTGTGCCTGACACCATTAGTATCCTTAGAGGACTCAAGGAGAA 1292
Query 1182 ATATGAAGGACACCATGGTGTTCGTATCCAAGACAGTGCTCTTGTTGTTTCTGCTCAATT 1241
||||| ||||| |||||||| || ||||||||||| |||||| | | ||||||| |
Sbjct 1293 GTATGAGGGACATCATGGTGTGCGAATCCAAGACAGAGCTCTTATAAATGCTGCTCAGCT 1352
Query 1242 GTCTGCGCGTTACATCACTGCTCGACGTTTACCGGATAAGGCAATTGATTTGGTTGATGA 1301
|||||| |||||||| |||| ||| | |||||||||||| ||||||||||||||||||||
Sbjct 1353 GTCTGCTCGTTACATAACTGGTCGGCATTTACCGGATAAAGCAATTGATTTGGTTGATGA 1412
Query 1302 GTCTTGTGC-ACATGTGAGAGTCCAGCTTGATAGTCAACCAGAAGAAATTGATTACCTTG 1360
| ||||||| | |||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct 1413 GGCTTGTGCGA-ATGTGAGAGTCCAGCTTGATAGTCAACCTGAAGAGATTGATAACCTTG 1471
Query 1361 AAAGAAAAACAATGCAACTA-AAGATAGAGA-TTCATGCTCTCGAAAAGG-AGAAGGACG 1417
|||| || | ||||| || || || || | |||| || || | ||||| |||||||
Sbjct 1472 AAAGGAAGAGGATGCAGCTGGAA-ATTGA-ACTTCACGC-CTTGGAAAGGGAGAAGGAT- 1527
Query 1418 ACAAAGCTAGCGAAGCTCGCCT-AGTCGAAGTGAGGAAAGAGCTTGATGACTTGAGGGAC 1476
| || || ||| ||||||| || | | || ||| ||||||||||||||||| |||| |||
Sbjct 1528 A-AA-GCCAGCAAAGCTCGACTTA-TAGAGGTGCGGAAAGAGCTTGATGACCTGAGAGAC 1584
Query 1477 AAGCTTGAGCCTCTTACAATAAAATACAAGAATG-AGAAA-AGGATAATTAATGAAACTC 1534
|||||| ||||||| || || ||||||| ||| | ||||| || | |||| |||| | ||
Sbjct 1585 AAGCTTCAGCCTCTCACGATGAAATACA-GAAAGGAGAAAGAG-AGAATTGATGAGATTC 1642
Query 1535 GGAGTCTTAAACAGAAACGAGATGAGCTCATGATTGCTCTACAAGAGGCTGAGA-GACA- 1592
| || |||||||||||| |||| ||||||||| || || | || ||||| || | || |
Sbjct 1643 GAAGGCTTAAACAGAAAAGAGAAGAGCTCATGTTTTCTTTGCAGGAGGCAGA-ACGA-AG 1700
Query 1593 ATATGACCTTCCTAA-AGCTGCTGATCTAAGATATGGGGCAATTCAGGAAGTAGAATCCG 1651
|||||||||| | || ||||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 1701 ATATGACCTTGC-AAGAGCTGCTGATCTAAGATATGGCGCAATTCAAGAAGTGGAATCTG 1759
Query 1652 CGATAGCAAAA-TTAGAAAAGAG-TG-TTA--AAGATAACGTGATGCTTACGGAAA-CTG 1705
| || || || || ||| || | || |||| || |||||||| || |||| | |
Sbjct 1760 CAATTGCCCAACTT-GAAG-GAACTTCTTCTGAAGAGAATGTGATGCTCACAGAAAAC-G 1816
Query 1706 TTGGGCCAGAGA-ATATTGCTGAGGTAGTGAGCCGATGGACTGGGATTCCAGTGACT-GC 1763
||||||| || | | ||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct 1817 TTGGGCCTGA-ACACATTGCTGAGGTTGTGAGCCGTTGGACAGGGATTCCAGTGACGAG- 1874
Query 1764 ACTTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGGTTGCACGAGAGAGT 1823
||||| ||| || |||||| ||||| ||||| |||||||||||||||||| || | ||
Sbjct 1875 ACTTGGCCAAAATGAGAAGGAGAGGTTGATTGGTCTTGCTGATAGGTTGCATAAGCGGGT 1934
Query 1824 TGTTGGACAAGA--CGAAGCCGTGAAA-GCTGTAGCTGCGGCAATTCTAAGGTCAAGGGT 1880
||| ||||| || | |||| || ||| || || ||| ||||||||||||||||||||
Sbjct 1935 TGTGGGACA-GAATC-AAGCGGT-AAATGCAGTTTCTGAGGCAATTCTAAGGTCAAGGGC 1991
Query 1881 TGGACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTT-TTCCTCGGTCCAACTGGTG 1939
||||| |||||||||||||| ||| |||| || || ||| ||||| || ||||||||||
Sbjct 1992 AGGACTTGGAAGGCCACAACAGCCAACTGGATCATT-CTTATTCCTTGGACCAACTGGTG 2050
Query 1940 TTGGTAAAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTACGATGAAAACCTAC 1999
|||| ||||||||||| || || |||||||||||||| || ||| | ||||||||||| |
Sbjct 2051 TTGGCAAAACTGAGCTCGCCAAGGCTCTTGCTGAGCAGCTGTTTGATGATGAAAACCT-C 2109
Query 2000 TT-GTTAGGCTTGATATGTCGGAGTATATGGATAGATC-CACTGT-TAATAAACTTATAG 2056
|| ||| || ||||||||||||| |||||||| | | | | |||| | | || || |
Sbjct 2110 TTAGTTCGGATTGATATGTCGGAATATATGGA-ACAACACTCTGTCTC-TCGCCTCATTG 2167
Query 2057 GGGCACCACCCGGGTACATTGGTCATGAAGAAGGTGGACAACTAACCGAACCCGTGAGGA 2116
|||||||||| ||||| ||||||| || ||||||||||||||||| || | |||||||
Sbjct 2168 GGGCACCACCAGGGTATGTTGGTCACGAGGAAGGTGGACAACTAACTGAGGCTGTGAGGA 2227
Query 2117 GACGACCTTACTGTGTTGTACTATTTGATGAAGTTGAAAAGGC-CAATGTTACTGTATTC 2175
| |||||||| ||||| |||| ||||||||||| || ||||| || |||| |||| |||
Sbjct 2228 GGCGACCTTATTGTGTCATACTCTTTGATGAAGTGGAGAAGGCTCA-TGTTGCTGTCTTC 2286
Query 2176 AACACGCTACTTCAAGTGTTAGAAGACGGGAGATTAACCGATTCGCATGGGAGGACAGTC 2235
||||| || || ||||| || || || || |||| || || ||| || |||||||||
Sbjct 2287 AACACTCTGCTCCAAGTTTTGGATGATGGTCGATTGACAGACGGGCAAGGCAGGACAGTC 2346
Query 2236 GATTTCAAAAACACAGTGATCATAATGACTTCTAACCTTGGTGCTGACCACCTTATTTCA 2295
||||||| ||| | ||||| || ||||| || |||||||||||||| ||||| || ||
Sbjct 2347 GATTTCAGGAACTCGGTGATAATCATGACATCAAACCTTGGTGCTGAACACCTCCTTGCA 2406
Query 2296 GGGCTTACTGGTGAA-GTGACAATGCAAGTGGCTCGAGACAACACAATGAAAGAGGTGAA 2354
||||| ||||| ||| || |||||| ||||||| || ||| ||| |||||||
Sbjct 2407 GGGCTAACTGG-GAAAGTAACAATGGAAGTGGCCCGGGACTGTGTGATGCGGGAGGTGAG 2465
Query 2355 AAAACATTTCAGGCCAGAGCTGTTAAACAGA-TTGGATGAGATAGTGATGTT 2405
||||| ||||| |||||||| || ||||| ||| | ||||| ||| ||||
Sbjct 2466 GAAACACTTCAGACCAGAGCTCTTGAACAGGCTTG-ACGAGATTGTGGTGTT 2516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139413934597
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5