BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946899

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44735.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   276    1e-73
  AT3G29150.1 | Symbols:  | pseudogene of F-box family protein | ...   171    6e-42


> AT2G44735.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: F-box family protein (TAIR:AT3G18720.1); Has 82 Blast 
hits to 82 proteins in 10 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr2:18438623-18441641 
FORWARD LENGTH=1104
Length=1104

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 226/263 (86%), Gaps = 6/263 (2%)
 Strand=Plus/Plus

Query  1    CTCCTACATCAGCTAGCTGTATGGTGATCTCGTACCCCCAAATATC-TTCATGCGCATCT  59
            ||||||||||| ||||||||||||| ||||| ||| ||||| || |  || |||| ||||
Sbjct  410  CTCCTACATCACCTAGCTGTATGGTCATCTCCTACACCCAACTA-CGATCCTGCGGATCT  468

Query  60   GTTGTGATCGATACTTGGCGGCCTGGTGAAACCGTATGGACCACCCATTGGTTTAAGAAT  119
            ||| |||||||||||||||||||||||||||||| |||||| || || || ||| |||| 
Sbjct  469  GTTTTGATCGATACTTGGCGGCCTGGTGAAACCGAATGGACTACACACTGCTTTGAGAAC  528

Query  120  CAGTTACCCAAGCGCATATGGGGC-AAATGTGTCTTCTCAAATGGTATGTTCTACTGTCT  178
            |||||||||   ||| ||| || | |||||||||||||| ||||| ||||||| ||||||
Sbjct  529  CAGTTACCCTTTCGC-TATTGGTCCAAATGTGTCTTCTCCAATGGCATGTTCTTCTGTCT  587

Query  179  CAGT-ACCTGCGGCTACCTTGGGGTTTTCGACCCGTCTAAATCAACCTGGAATATTCTTC  237
            |||| |  |||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct  588  CAGTGAA-TGCGGCTATCTTGGGGTTTTCGACCCCTCTAAAGCAACGTGGAATATTCTTC  646

Query  238  CTGTGAAACCATGTCCCGCCTTT  260
            | |||||||||||||| ||||||
Sbjct  647  CAGTGAAACCATGTCCGGCCTTT  669


 Score = 60.2 bits (32),  Expect = 1e-08
 Identities = 38/41 (93%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  273  CCAGTATTGATGACGGAGCATGAAGGAGACATCTTTGTTAT  313
            ||||| || |||||||||||||||||||||||||||| |||
Sbjct  700  CCAGTGTTTATGACGGAGCATGAAGGAGACATCTTTGATAT  740


> AT3G29150.1 | Symbols:  | pseudogene of F-box family protein 
| chr3:11108313-11109194 REVERSE LENGTH=882
Length=882

 Score =  171 bits (92),  Expect = 6e-42
 Identities = 162/195 (83%), Gaps = 8/195 (4%)
 Strand=Plus/Plus

Query  61   TTGTGATCGAT-ACTTGGCGGCCTGGTGAAACCGTATGGACCACCCATTGGTTTAAGAAT  119
            ||| |||| || |||||||| | |||||||||||| ||||||||| |||| ||   ||| 
Sbjct  464  TTGAGATC-ATGACTTGGCGTCTTGGTGAAACCGTTTGGACCACCAATTGCTTCGGGAAC  522

Query  120  CAGTTACCCAAG-CGCATATGGGGCAAATGTGTCTTCTCAAATGGTATGTTCTACTGTCT  178
            ||  ||| |  | |||| ||||| ||||||||| || || |||||||||||||  |||||
Sbjct  523  CACATACGC-GGTCGCAAATGGGACAAATGTGTTTTTTCGAATGGTATGTTCTTTTGTCT  581

Query  179  CAGTACCTGCGGCTACCTTGGGGTTTTCGACCCGTCTA-A-ATCAACCTGGAATATTCTT  236
            ||||||||||||||||||  |||||||||||||| | | | | |||||||||||||||||
Sbjct  582  CAGTACCTGCGGCTACCTCAGGGTTTTCGACCCG-C-ACAGAGCAACCTGGAATATTCTT  639

Query  237  CCTGTGAAACCATGT  251
            ||||||||||| |||
Sbjct  640  CCTGTGAAACCTTGT  654



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5