BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946907

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00280.1 | Symbols: PSBC | photosystem II reaction center pr...   259    7e-69
  ATMG00110.1 | Symbols: CCB206 | cytochrome C biogenesis 206 | c...  76.8    7e-14


> ATCG00280.1 | Symbols: PSBC | photosystem II reaction center 
protein C | chrC:33720-35141 FORWARD LENGTH=1422
Length=1422

 Score =  259 bits (140),  Expect = 7e-69
 Identities = 144/146 (99%), Gaps = 0/146 (0%)
 Strand=Plus/Plus

Query  13    GGAGAAACAATGCGCTTTTGGGATCTGCGTGCTCCCTGGTTAGAACCTTTAAGGGGTCCT  72
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1057  GGAGAAACAATGCGTTTTTGGGATCTGCGTGCTCCCTGGTTAGAACCTTTAAGGGGTCCT  1116

Query  73    AACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCG  132
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1117  AACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCG  1176

Query  133   GCAGAATATATGACTCATGCTCTTTT  158
             |||||||||||||||||||||| |||
Sbjct  1177  GCAGAATATATGACTCATGCTCCTTT  1202


> ATMG00110.1 | Symbols: CCB206 | cytochrome C biogenesis 206 | 
chrM:30463-31083 FORWARD LENGTH=621
Length=621

 Score = 76.8 bits (41),  Expect = 7e-14
 Identities = 41/41 (100%), Gaps = 0/41 (0%)
 Strand=Plus/Plus

Query  152  CTCTTTTTCCAATTTCGGTCTCGATTAGTTTACAAGATTAA  192
            |||||||||||||||||||||||||||||||||||||||||
Sbjct  581  CTCTTTTTCCAATTTCGGTCTCGATTAGTTTACAAGATTAA  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9500604561


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5