BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946908
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-term... 953 0.0
> AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal
domain | chr4:8406335-8407845 REVERSE LENGTH=845
Length=845
Score = 953 bits (516), Expect = 0.0
Identities = 542/555 (98%), Gaps = 0/555 (0%)
Strand=Plus/Plus
Query 15 AAGGTTGAACAATGTTTCTCAAAGTCCAGTTACCATGGAACGTGATGATTCCAGCTGAAA 74
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 133 AAGGTTGAACAATGTTTCTCAAAGTCCAATTACCATGGAACGTGATGATTCCAGCTGAAA 192
Query 75 ACATGGATGCCAAAGGGCTGATTTTGAAGAGAGCTATACTAGTAGAGTTACTAGACGCGT 134
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 193 ACATGGATGCCAAAGGGCTGATGTTGAAGAGAGCTATACTAGTAGAGTTACTAGAGGCGT 252
Query 135 TTGCTTCCAAGAAAGCAACCAAGGAGCTTGGCTACTATGTGGCAGTCACAACTTTGGACA 194
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 253 TTGCTTCCAAGAAAGCAACCAAGGAGCTTGGCTACTACGTGGCAGTCACAACTTTGGACA 312
Query 195 AGATCGGAGAAGGCAAAATCAGGGAGCATACCGGTGAAGTTTTGTTCCCGGTAATGTTCA 254
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 313 AGATTGGAGAAGGCAAAATCAGGGAGCACACCGGTGAAGTTTTGTTCCCGGTAATGTTCA 372
Query 255 GTGGAATGACTTTCAAGATCTTCAAAGGAGAGATAATTCACGGTGTGGTGCACAAGGTGT 314
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GCGGAATGACTTTCAAGATCTTCAAAGGAGAGATAATTCACGGTGTGGTGCACAAGGTGT 432
Query 315 TGAAGCACGGTGTCTTCATGAGGTGTGGTCCAATCGAGAATGTTTACCTCTCCTACACGA 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TGAAGCACGGTGTCTTCATGAGGTGTGGTCCAATCGAGAATGTTTACCTCTCCTACACGA 492
Query 375 AGATGCCGGATTACAAGTATGTCCCTGGAGAGAACCCGATCTTCATGAATGAGAAGACGT 434
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 493 AGATGCCGGATTACAAGTATATCCCTGGAGAGAACCCGATCTTCATGAATGAGAAGACGT 552
Query 435 CTAGGATTCAGGTTGAGACTACAGTGAGGGTTGGGGTGATTGGGATAAAGTGGATGGAGG 494
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 553 CTAGGATTCAGGTTGAGACTACAGTGAGGGTTGTTGTGATTGGGATAAAGTGGATGGAAG 612
Query 495 CAGAGAGGGAGTTTCAGGCGTTGGCTAGCTTGGAAGGTGACTACCTTGGACCATTATCTG 554
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 613 TAGAGAGGGAGTTTCAGGCGTTGGCTAGCTTGGAAGGTGACTATCTTGGACCATTATCTG 672
Query 555 AAGAGTGATCTGCTT 569
|||||||||||||||
Sbjct 673 AAGAGTGATCTGCTT 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5