BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946923
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid induci... 893 0.0
AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible 2 ... 339 2e-92
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptiona... 217 1e-55
> AT4G14560.1 | Symbols: IAA1, AXR5 | indole-3-acetic acid inducible
| chr4:8361058-8361986 FORWARD LENGTH=837
Length=837
Score = 893 bits (483), Expect = 0.0
Identities = 528/550 (96%), Gaps = 1/550 (0%)
Strand=Plus/Plus
Query 1 TTAAAGTATAGTGAGAGAAAATGGAAGTCATCAATGGGCTTAACCTTAAGGACACCGAGC 60
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct 105 TTAAAGTATAGTGAGAGAATATGGAAGTCACCAATGGGCTTAACCTTAAGGACACAGAGC 164
Query 61 TTCGTTTGGGATTACCTGGAGCacaagaagaacaacaacaagaagtttcttgcgtcagaa 120
|||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct 165 TTCGTTTGGGATTACCCGGAGCACAAGAAGAACAACAACTAGAACTTTCTTGCGTCAGAA 224
Query 121 gcaacaacaagcgaaagaacaacGACTCAAAAGAAGAATCTGCTCCTCCTCCTGCCAAAA 180
||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 225 GCAACAACAAGCGCAAGAACAACGACTCAACAGAAGAATCTGCTCCTCCTCCTGCAAAAA 284
Query 181 CACAAATCGTGGGATGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 240
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 285 CACAAATCGTTGGATGGCCTCCAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 344
Query 241 TTAGTTATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGA 300
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 345 TGAGTTATGTGAAAGTGAGTATGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGA 404
Query 301 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 405 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTAGAGAACATGTTCAAGTTCACAGTAG 464
Query 361 GTGAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACA 420
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 465 GTGAATATTCCGAGAGAGAAGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACA 524
Query 421 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 584
Query 481 AAAAACTCAGAATCATGAAAGGATCTGAAGTTCCTCCTGCCTTATGATCCATTGTCTCAA 540
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 585 AAAAACTCAGAATCATGAAAGGATCCGAAGCTCCTACTGCCTTATGATCCATTGTCTCAA 644
Query 541 A-CACCTTTT 549
| ||||||||
Sbjct 645 AACACCTTTT 654
> AT3G23030.1 | Symbols: IAA2 | indole-3-acetic acid inducible
2 | chr3:8180768-8181800 REVERSE LENGTH=941
Length=941
Score = 339 bits (183), Expect = 2e-92
Identities = 404/505 (80%), Gaps = 37/505 (7%)
Strand=Plus/Plus
Query 31 TCAATGGGCTTAACCTTAAGGACACCGAGCT-TCGT-TTGGGATTACCTGG-AGCaca-a 86
|||| | |||||||||||||||||| ||||| | || || |||||||| || || ||| |
Sbjct 132 TCAACGAGCTTAACCTTAAGGACACAGAGCTAT-GTCTT-GGATTACCCGGAAGAACAGA 189
Query 87 gaag----aacaacaacaagaagtttcttgcgtcagaagcaacaacaagcg---a---aa 136
|||| || || ||||||| ||||||||||| | ||| ||||||||||| | |
Sbjct 190 GAAGATCAAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGTAACAACAAGCGTCTATTTGA 249
Query 137 gaacaacGAC-TCA-AAAGAAGAATCTGCTCCTCCTCCTGCCAAAACACAAATCGTGGGA 194
| | ||| | | | |||||||| | || | |||||| ||||||| |||||||| ||
Sbjct 250 GGA-AAC-TCGTGATGAAGAAGAA--T-CTACACCTCCTACCAAAACTCAAATCGTTGGT 304
Query 195 TGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTTAGTTATGTGAAA 254
||||| ||| |||||||| ||||||| ||||||||| | || || || ||||||
Sbjct 305 TGGCCACCAGTGAGATCTTCCCGTAAG---AACAACAAC---AGTGTGAGCTACGTGAAA 358
Query 255 GTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGATGTACAAAAACTAT 314
||||||||||||||||| || || || || || || |||||||||| |||||||||||
Sbjct 359 GTGAGTATGGACGGAGCTCCTTACCTTCGCAAGATCGATCTCAAGACATACAAAAACTAC 418
Query 315 CCAGAGCTTCTCAAAGCACTCGAGAACATGTTC-AAGTTCACAG-TAGGTGAATATTCG- 371
|| |||||||||||||| | ||||| |||||| ||| ||| | | |||||||||| |
Sbjct 419 CCCGAGCTTCTCAAAGCGTTAGAGAATATGTTCAAAG-TCA-TGATTGGTGAATATT-GT 475
Query 372 GAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACAAAGATGGAGAT 431
|| |||||||| ||||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 476 GAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGAC 535
Query 432 TGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAG 490
||||||||||| ||||||||||||||||||||||||||||| |||||| || | ||||||
Sbjct 536 TGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGT-AAGAGACTCAG 594
Query 491 AATCATGAAAGGATCTGAAGTTCCT 515
||||||||| ||||| || | ||||
Sbjct 595 AATCATGAAGGGATCCGACGCTCCT 619
> AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional
regulator family protein | chr5:17550233-17551581 FORWARD
LENGTH=1168
Length=1168
Score = 217 bits (117), Expect = 1e-55
Identities = 224/274 (82%), Gaps = 14/274 (5%)
Strand=Plus/Plus
Query 246 TATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAA-GATGTA 304
||||||||||| |||||||| || || |||||||| | || |||||||| || ||||||
Sbjct 500 TATGTGAAAGTAAGTATGGATGGTGCTCCATATCTAAGGAAGATAGATCT-AACGATGTA 558
Query 305 CAAA-AACTATCCAGAGCTT-CTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAGGT 362
||| || ||||||||| || | ||| |||| || |||||||| || ||| | || ||
Sbjct 559 TAAACAA-TATCCAGAG-TTGATGAAATCACTTGAAAACATGTTTAAATTCTCTGTGGGA 616
Query 363 GAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGA-TTTGTACCTACTTATGAAGACAA 421
||||||| || |||||||| || ||||| ||| || |||||||||||||||||||||||
Sbjct 617 GAATATTTTGAGAGAGAAGGATATAAAGGCTCA-GACTTTGTACCTACTTATGAAGACAA 675
Query 422 AGATGGAGATTGGATG-TTGGTCGGTGATGTTCCATGGGACATGTTCTCTT-CATCTTGT 479
|||||| ||||||||| ||| | ||||||||||| ||||| ||||| | || | ||||||
Sbjct 676 AGATGGTGATTGGATGCTTGTT-GGTGATGTTCCTTGGGAGATGTT-TGTTTCGTCTTGT 733
Query 480 CAAAAA-CTCAGAATCATGAAAGGATCTGAAGTT 512
|| | || || |||||||||||||||||||||
Sbjct 734 -AAGAGGCTAAGGATCATGAAAGGATCTGAAGTT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5