BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946932

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14455.1 | Symbols: ATBET12, BET12, ATBS14B, BS14B | Target ...   664    0.0  


> AT4G14455.1 | Symbols: ATBET12, BET12, ATBS14B, BS14B | Target 
SNARE coiled-coil domain protein | chr4:8310336-8312321 FORWARD 
LENGTH=922
Length=922

 Score =  664 bits (359),  Expect = 0.0
 Identities = 395/413 (96%), Gaps = 0/413 (0%)
 Strand=Plus/Plus

Query  25   TGAACTATCGAAGGGAGAATCGTGCTTCGAGAACGTCTCTATTCGATGGTCTTGAAGGAC  84
            |||||| ||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct  148  TGAACTTTCGAAGGGAGAATCGTGCTTCGAGAACGTCTCTCTTTGATGGCCTTGATGGAC  207

Query  85   TTGAAGAAGGTCGCTTGAGAGCTTCTTCTTCGTATTCTCATGACGAACGCGACAATGACG  144
            ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
Sbjct  208  TTGAAGAAGGTCGCTTGAGAGCTTCTTCTTCGTATGCTCATGACGAACGTGATAATGATG  267

Query  145  AAGCGTTGGAGAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAGTGACTGGAGATATAC  204
            |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  268  AAGCTTTGGAAAATCTTCAGGACAGAGTTTCGTTTCTCAAGAGAGTGACTGGAGACATAC  327

Query  205  ATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGGGGAACAAAATGGACTCCG  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  ATGAAGAAGTTGAGAATCATAACCGCTTGCTTGACAAAGTGGGGAACAAAATGGACTCCG  387

Query  265  CGAGGGGGATAATGTCAGGAACGATCAACCGTTTCAAGTTGGTCTTTGAGAAGAAGTCTA  324
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  388  CGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGGTCTTTGAGAAGAAGTCTA  447

Query  325  ATCGAAAAAGTTGCAAACTCATTGCGTATTTTGTACTCCTGTTCTTGATCATGTATTACC  384
            |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct  448  ATCGAAAAAGTTGCAAACTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACC  507

Query  385  TTATTAGGCTATTAAACTACATCAAAGGGTGAATTTGGATACAAGAAGAAAGT  437
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  508  TTATTAGGCTATTAAACTACATCAAAGGGTAAATTTGGATACAAGAAGAAAGT  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5