BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946933

Length=358
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14450.1 | Symbols:  | unknown protein; LOCATED IN: chloropl...   412    8e-115


> AT4G14450.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins 
in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 
0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr4:8309474-8310058 FORWARD LENGTH=585
Length=585

 Score =  412 bits (223),  Expect = 8e-115
 Identities = 297/332 (89%), Gaps = 8/332 (2%)
 Strand=Plus/Plus

Query  4    TTCACAAATCTATCTCCATGGCGTCCACGATGCAAAGAACAAGCAGCTCCGCAGCCAACA  63
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |
Sbjct  83   TTCACAAATCTATCTCCATGGCGTCCACGATGCAAAGAACAAGCAGCTCCGCGGCCAGTA  142

Query  64   ACGAGATGCAACATAGCCAGCTACAGAGACGAGCTCCGTCTTTGATCATCAAACCGACGT  123
            |||||| ||||| |||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct  143  ACGAGAGGCAACTTAGCCAGCTACAGAGACGAGCTCCGTCTTTAATGATCAAACCAACGT  202

Query  124  CG---ACTAATTGGAACATGGCGATCCCTCTCCTTTCGCCGCTAGCTCTTTCTCCAACAT  180
            |    | ||| |||||| ||||||||||||||||||| ||||| |||| ||||| |||||
Sbjct  203  CTTTTAGTAACTGGAACGTGGCGATCCCTCTCCTTTCACCGCTCGCTCCTTCTCTAACAT  262

Query  181  CGTCTTTCCACCAATCGCATGTTCCTCCGCCCCATAACAAGACTGAGAAACCAGTGGAAG  240
            | || ||| ||||||| |||||||||||||| || ||||||||||||| |||||||||||
Sbjct  263  CATCCTTCGACCAATCACATGTTCCTCCGCCGCAGAACAAGACTGAGATACCAGTGGAAG  322

Query  241  AAG---TGAAGAAGACACCAGTTTTCAAGAAATGGCAACATCCGGCGTCCCCGTTCTGCT  297
            |||   ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct  323  AAGAGGTGAAGAAGACACCAGTTTTCAAGAAATGGCAACATCCCGCGTCGCCGTTCTGCT  382

Query  298  ACGAAC-AGACGACGTTTGTCCCACCGTTCAT  328
            |||| | | || ||||||||||||||||||||
Sbjct  383  ACGAGCCA-ACAACGTTTGTCCCACCGTTCAT  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16789428166


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5