BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946934
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14440.1 | Symbols: ATECI3, ECI3, HCD1 | 3-hydroxyacyl-CoA d... 1125 0.0
AT4G14430.1 | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | indo... 532 1e-150
> AT4G14440.1 | Symbols: ATECI3, ECI3, HCD1 | 3-hydroxyacyl-CoA
dehydratase 1 | chr4:8306745-8307753 REVERSE LENGTH=1009
Length=1009
Score = 1125 bits (609), Expect = 0.0
Identities = 708/756 (94%), Gaps = 6/756 (1%)
Strand=Plus/Plus
Query 5 TCCTTAACCTGA-GCACCATGTGTACGTTAGAGAAGCGTGGCGATCTCTTTCACCTAACC 63
|||||||| | | ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 75 TCCTTAACGT-ACGCACCATGTGTACGTTAGAGAAGCGCGGCGATCTCTTTCTCCTAACC 133
Query 64 CTAACCGGTGACGACGAGCACAGATTCCACCCGGACACGATCGCCTCCGTTCTCTCGCTT 123
|||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 134 CTAACCGGCGAAGACGAGCACAGATTCCACCCCGACACGATCGCCTCTGTTCTCTCGCTT 193
Query 124 CTTGAACAAGCTAAA-TCTCAATCTACAAAAGGATCCGTCCTCATCACTACCGGTCACGG 182
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 194 CTTGAACAAGC-AAAGTCTCAATCCACAAAAGGATCCGTCCTCATCACTACCGGTCACGG 252
Query 183 AAAGTTCTTCTCCAATGGCTTTGATCTCGCATGGGCCCAATCCGCTGGACACGGGGCTAT 242
|||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 253 AAAGTTCTTCTCCAATGGCTTTGACCTCGCGTGGGCTCAATCCGCTGGACACGGTGCTAT 312
Query 243 AGAACGGATGCACCAAATGGTCAAATCCTTCAAACCCGTGTTAGCGGCCCTCCTCGATCT 302
| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 313 AAAACGGATGCACCAAATGGTCAAATCCTTTAAACCGGTGTTAGCCGCCCTCCTCGATCT 372
Query 303 TCCAATGCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCTCGGGGCTGATGTTTGC 362
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 373 TCCAATGCCGACGATCGCCGCCTTGAACGGCCACGCGGCAGCCTCGGGGCTGATGTTTGC 432
Query 363 GCTGAGCCATGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATACATGAGCGAGGT 422
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 433 GCTGAGCCACGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATATATGAGCGAGGT 492
Query 423 GGACATCGGGCTGCCGGTGCCAGACTACTTCTCGGCGTTGGTTGTAGCTAAGGTCGGGTC 482
|||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 493 GGACATCGGGCTACCGGTGCCGGACTACTTCTCGGCGTTGGTCGTGGCTAAGGTTGGGTC 552
Query 483 AGGTATCGCGAGAAGGGAGCTGTTGCTGAGCGGGAAGAAGCTCAAAGGAGAAGACGCGGT 542
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 553 AGGTATCGCGAGAAGGGAGCTGTTACTGAGCGGGAAGAAGCTCAAAGGAGAAGAAGCGGT 612
Query 543 GGCTCTCGGGATCGTGGACTCCGCGGCGCACGATAGCGCTGAAGGTGTTGTGGAGGCTAC 602
||||||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||
Sbjct 613 GGCTCTCGGGATCGTGGACTCAGCGGCGCATGATAGTGCGGAAGGTGTGGTGGAGGCTAC 672
Query 603 AGTGAGCCTTGGGGAAAGTTTGGCTGCTAAGAAATGGAATGGAGAGGTGTATGCATCCAT 662
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 673 AGTGAGCCTTGGAGAAAGTTTGGCCGCTAAGAAATGGAATGGTGAGGTGTATGCAACCAT 732
Query 663 TAGGA-GAAGTTTGTATCCGGAGCTTTGTCGGATGCTGGAGTTAACGGCCAATAACTTGG 721
||||| || |||||||||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 733 TAGGAAGA-GTTTGTATCCGGAGCTTTGTCGGATGGTTGATTTAACGGCAAATAACTTGG 791
Query 722 CAACTCACAATCTCTAGAAACTCTCATTGTCTTGTT 757
| |||||||| |||||||||||||||||||||||||
Sbjct 792 CCACTCACAACCTCTAGAAACTCTCATTGTCTTGTT 827
> AT4G14430.1 | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | indole-3-butyric
acid response 10 | chr4:8304600-8305705 REVERSE
LENGTH=1106
Length=1106
Score = 532 bits (288), Expect = 1e-150
Identities = 564/695 (81%), Gaps = 28/695 (4%)
Strand=Plus/Plus
Query 18 CACCATGTGTACGTTAGAGAAGCGTGGCGATCTCTTTCACCTAACCCTAACCGGTGACGA 77
||||||||||||||||||||| || ||||||||||| | ||||||||||||||| ||||
Sbjct 70 CACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCTAACCCTAACCGGAGACGG 129
Query 78 CGAGCACAGATTCCACCCGGACACGATCGCCTCCGTTCTCTCGCTTCTTGAACAAGCTAA 137
||| |||||||||||||| ||||| || ||| || ||||||| ||||| |||||||| ||
Sbjct 130 CGAACACAGATTCCACCCCGACACAATTGCCACCATTCTCTCCCTTCTCGAACAAGCCAA 189
Query 138 ATCTCAATCTACAAAAGGATCCGTCCTCATCACTACCGGTC-ACGG-AAAGTTCTTCTCC 195
||||||||| || |||||| |||||||||| ||| | | |||| ||| |||||||||
Sbjct 190 ATCTCAATCCACCCGTGGATCCATCCTCATCACCACC-GCCAACGGCAAA-TTCTTCTCC 247
Query 196 AATGGCTTTGATCTCGCATGGGCCCAATCCGCTGGA--C---A-CGGGGCTATAGAA-CG 248
|| || || ||||| |||||||| ||| |||| ||| | | ||| || | || ||
Sbjct 248 AACGGATTCGATCTTGCATGGGCTCAAACCGCCGGATCCAAAACCGGAGCCGCA-AACCG 306
Query 249 GATGCACCAAATGGTCAAATCCTTCAAACCCGTGTTAGCGGCCCTCCTCGATCTTCCAAT 308
| | ||||||||||| |||| |||||||| ||| |||| || || |||||||| || ||
Sbjct 307 GCTTCACCAAATGGTTGAATCATTCAAACCGGTGGTAGCAGCGCTTCTCGATCTCCCTAT 366
Query 309 GCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCTCGGGGCTGATGTTTGCGCT--G 366
|||||||||||||||||||||||||||||| |||||| |||| |||| |||| ||| |
Sbjct 367 GCCGACGATCGCCGCCTTGAACGGCCACGCCGCCGCCGCGGGATTGAT-TTTG-GCTTTG 424
Query 367 AGCCATGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATACATGAGCGAGGTGGAC 426
|||||||| ||||| |||||||||||||| ||||||||||| || ||||| || || |||
Sbjct 425 AGCCATGATTACGTGTTCATGAGGAAAGATCGTGGGGTTCTGTATATGAGTGAAGTTGAC 484
Query 427 ATCGGGCTGCCGGTGCCAGACTACTTCTCGGCGTTGGTT-GTAGCTAAGGTCGGGTC-AG 484
|||||||| || |||| || || ||||||||||||||| | |||||| ||||| | ||
Sbjct 485 ATCGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAGG-GCTAAGATCGGGACGAG 543
Query 485 GTATCG-CGAGAAGGGAGCTGTTGCTGAGCGGGAAGAAGCTCAAAGGAGAAGACGCGGTG 543
| || |||| || ||||||||| |||| ||||||||| | | ||||||||| ||||||
Sbjct 544 -TG-CGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGAAGAAGCGGTG 601
Query 544 GCTCTCGGGATCGTGGACTCCGCGGCGCACGATAGCGCTGAAGGTGTTGTGGAGGCTACA 603
| | | ||||| || ||||| || ||| | ||||| | ||||||||||| | |||||
Sbjct 602 GGTTTGGGGATTGTTGACTCGGCCGCGTATGATAGTGAGGAAGGTGTTGTTGTGGCTAGT 661
Query 604 GTGAGCCTTGG-G-GAAAGTTTGGCTGCTAAGAAATGGAATGGAGAGGTGTATGCATCCA 661
||| ||||||| | |||| || ||| || |||||||||| || ||||| ||||| || |
Sbjct 662 GTGCGCCTTGGTGAGAAA-TT-GGCGGCGAAGAAATGGAGCGGTGAGGTTTATGCGTCGA 719
Query 662 TTAGGA-GAAGTTTGTATCCGGAGCTTTGTCGGAT 695
| |||| || |||||||||||||||||||| ||||
Sbjct 720 TAAGGAAGA-GTTTGTATCCGGAGCTTTGTGGGAT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5