BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946935
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14430.1 | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | indo... 1177 0.0
AT4G14440.1 | Symbols: ATECI3, ECI3, HCD1 | 3-hydroxyacyl-CoA d... 584 4e-166
> AT4G14430.1 | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | indole-3-butyric
acid response 10 | chr4:8304600-8305705 REVERSE
LENGTH=1106
Length=1106
Score = 1177 bits (637), Expect = 0.0
Identities = 709/745 (95%), Gaps = 0/745 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCCTCCGATCACCACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TCTTCTTCCTCCGATCACCACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCT 111
Query 61 AACCCTAACCGGCGACGGCGAACACAGATTCCACCCCGACACAATCGCCACCATCCTCTC 120
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 112 AACCCTAACCGGAGACGGCGAACACAGATTCCACCCCGACACAATTGCCACCATTCTCTC 171
Query 121 CCTTCTCGAACAAGCCAAATCTCAATCCAAACGTGGATCCATCCTCATCACCACCGCTAA 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 172 CCTTCTCGAACAAGCCAAATCTCAATCCACCCGTGGATCCATCCTCATCACCACCGCCAA 231
Query 181 CGGCAAATTCTTCTCCAACGGCTTCGATCTCGCCTGGGCTCAAACCGCCGGATCCATAAC 240
||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |||
Sbjct 232 CGGCAAATTCTTCTCCAACGGATTCGATCTTGCATGGGCTCAAACCGCCGGATCCAAAAC 291
Query 241 CGGAGCTGCAAACCGGCTTCATCAAATGGTTGAATCCTTCAAACCGGTGGTAGCAGCGCT 300
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 292 CGGAGCCGCAAACCGGCTTCACCAAATGGTTGAATCATTCAAACCGGTGGTAGCAGCGCT 351
Query 301 TTTAGATCTCCCTATGCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCGCGGGACT 360
| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 352 TCTCGATCTCCCTATGCCGACGATCGCCGCCTTGAACGGCCACGCCGCCGCCGCGGGATT 411
Query 361 GATGCTGGCTATAAGCCATGATTACGTGCTCATGAGGAAAGACCGTGGGGTTCTGTACAT 420
||| ||||| | ||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 412 GATTTTGGCTTTGAGCCATGATTACGTGTTCATGAGGAAAGATCGTGGGGTTCTGTATAT 471
Query 421 GAGCGAGGTTGACATCGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAGGGCTAA 480
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GAGTGAAGTTGACATCGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAGGGCTAA 531
Query 481 GATCGGTACGAGTGCGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGA 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GATCGGGACGAGTGCGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGA 591
Query 541 AGAAGCGGTGGGTTTGGGGATTGTTGACTCGGCGGCGTATGATAGTGAGGAAGGTGTTGT 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 592 AGAAGCGGTGGGTTTGGGGATTGTTGACTCGGCCGCGTATGATAGTGAGGAAGGTGTTGT 651
Query 601 TGAGGCTAGTGTGCGCCTTGGTGAGAAATTAGCGGTGAAGAAATGGAGTGGTGAGGTTTA 660
|| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||
Sbjct 652 TGTGGCTAGTGTGCGCCTTGGTGAGAAATTGGCGGCGAAGAAATGGAGCGGTGAGGTTTA 711
Query 661 TGCGTCGATTAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTAGAGGCTAG 720
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 712 TGCGTCGATAAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTAGAGACTAG 771
Query 721 AGTCTTTTCAACACCTAAGCTCTAA 745
||| ||| |||||||||||||||||
Sbjct 772 AGTGTTTGCAACACCTAAGCTCTAA 796
> AT4G14440.1 | Symbols: ATECI3, ECI3, HCD1 | 3-hydroxyacyl-CoA
dehydratase 1 | chr4:8306745-8307753 REVERSE LENGTH=1009
Length=1009
Score = 584 bits (316), Expect = 4e-166
Identities = 579/704 (82%), Gaps = 26/704 (4%)
Strand=Plus/Plus
Query 19 CACCATGTGTACGTTAGAGAAACGCGGCGATCTCTTCCTCCTAACCCTAACCGGCGACGG 78
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 88 CACCATGTGTACGTTAGAGAAGCGCGGCGATCTCTTTCTCCTAACCCTAACCGGCGAAGA 147
Query 79 CGAACACAGATTCCACCCCGACACAATCGCCACCATCCTCTCCCTTCTCGAACAAGCCAA 138
||| |||||||||||||||||||| |||||| | | ||||| ||||| ||||||| |||
Sbjct 148 CGAGCACAGATTCCACCCCGACACGATCGCCTCTGTTCTCTCGCTTCTTGAACAAG-CAA 206
Query 139 A-TCTCAATCCA-AACGTGGATCCATCCTCATCACCACCGCTAACGGCAAA-TTCTTCTC 195
| |||||||||| || |||||| |||||||||| |||| | |||| ||| ||||||||
Sbjct 207 AGTCTCAATCCACAA-AAGGATCCGTCCTCATCACTACCGGTCACGG-AAAGTTCTTCTC 264
Query 196 CAACGGCTTCGATCTCGCCTGGGCTCAAACCGCCGGATCCATAACCGGAGCTGCAAACCG 255
||| ||||| || ||||| ||||||||| |||| ||| | | ||| ||| ||| ||
Sbjct 265 CAATGGCTTTGACCTCGCGTGGGCTCAATCCGCTGGA--C---A-CGGTGCTATAAAACG 318
Query 256 GCTTCATCAAATGGTTGAATCCTTCAAACCGGTGGTAGCAGCGCTTTTAGATCTCCCTAT 315
| | || |||||||| ||||||| ||||||||| |||| || || | ||||| || ||
Sbjct 319 GATGCACCAAATGGTCAAATCCTTTAAACCGGTGTTAGCCGCCCTCCTCGATCTTCCAAT 378
Query 316 GCCGACGATCGCCGCCTTGAACGGCCACGCAGCCGCCGCGGGACTGATGCTGGCTATAAG 375
|||||||||||||||||||||||||||||| || ||| |||| |||||| | || | ||
Sbjct 379 GCCGACGATCGCCGCCTTGAACGGCCACGCGGCAGCCTCGGGGCTGATGTTTGCGCTGAG 438
Query 376 CCATGATTACGTGCTCATGAGGAAAGACCGTGGGGTTCTGTACATGAGCGAGGTTGACAT 435
||| || ||||| ||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 439 CCACGACTACGTTTTCATGAGGAAAGACCGTGGGGTTCTATATATGAGCGAGGTGGACAT 498
Query 436 CGGGCTTTCGATGCCGGATTATTTCTCGGCGTTGGTTAG-GGCTAAGATCGG-T-ACG-A 491
|||||| || ||||||| || |||||||||||||| | ||||||| | || | | | |
Sbjct 499 CGGGCTACCGGTGCCGGACTACTTCTCGGCGTTGGTC-GTGGCTAAGGTTGGGTCAGGTA 557
Query 492 GTGCGGCGAGGAGAGAGCTGTTGTTGAGTGGGAAGAAGATTAGAGGAGAAGAAGCGGTGG 551
| || |||| || |||||||| |||| ||||||||| | | |||||||||||||||||
Sbjct 558 -T-CG-CGAGAAGGGAGCTGTTACTGAGCGGGAAGAAGCTCAAAGGAGAAGAAGCGGTGG 614
Query 552 GTTTGGGGATTGTTGACTCGGCGGCGTATGATAGTGAGGAAGGTGTTGTTGAGGCTAGTG 611
| | ||||| || ||||| |||||| ||||||||| ||||||||| || ||||||| |
Sbjct 615 CTCTCGGGATCGTGGACTCAGCGGCGCATGATAGTGCGGAAGGTGTGGTGGAGGCTACAG 674
Query 612 TGCGCCTTGGTGAGAAA-TTAG-CGG-TGAAGAAATGGAGTGGTGAGGTTTATGCGTCGA 668
|| ||||||| ||||| || | | | | |||||||||| ||||||||| ||||| | |
Sbjct 675 TGAGCCTTGG--AGAAAGTTTGGCCGCT-AAGAAATGGAATGGTGAGGTGTATGCAACCA 731
Query 669 TTAGGAAGAGTTTGTATCCGGAGCTTTGTGGGATTCTTGGTTTA 712
||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 732 TTAGGAAGAGTTTGTATCCGGAGCTTTGTCGGATGGTTGATTTA 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5